Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00046
         (836 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcript...    25   2.9  
CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.           23   8.7  

>AB090817-2|BAC57910.1| 1009|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1009

 Score = 25.0 bits (52), Expect = 2.9
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 9/65 (13%)
 Frame = +2

Query: 647 PENDKPDNVPGYLRPT----RTSQIKEETII-----HDTEVSSRRGVEFGVELRRRALNV 799
           P+ +KP   PG +RP        +  E  I+     H  EV+     +FG   RR  ++ 
Sbjct: 462 PKPNKPPGEPGSVRPICLLDGAGKGLERIIVQRLNAHIEEVNGLSDDQFGFRSRRSTVDA 521

Query: 800 LQRAV 814
           +QR V
Sbjct: 522 IQRVV 526


>CR954257-2|CAJ14153.1| 1664|Anopheles gambiae Tubby protein.
          Length = 1664

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 13/46 (28%), Positives = 18/46 (39%)
 Frame = +3

Query: 477 RSIESIKPQEEYAKVQVAYPQNHQSRDLNHRSDILLKRSQRKLQNL 614
           R I  +     + K  V YP         HRSD++L +     Q L
Sbjct: 34  RGIVGVTFTTSHCKKNVDYPLRTNYNLRGHRSDVILVKWNEPYQKL 79


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 690,282
Number of Sequences: 2352
Number of extensions: 13309
Number of successful extensions: 51
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 88478514
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)