Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00046
         (836 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             26   0.37 
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    24   1.5  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    24   1.5  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   8.1  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 26.2 bits (55), Expect = 0.37
 Identities = 19/81 (23%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
 Frame = +2

Query: 482 NRINQTSRRIRESPSRLSTESPVPRSKSPIRHTVETVTTKITKSAAPRGESPKQRPENDK 661
           N   +  R   E+  RL  +     + SP+R   +  + +   S A   +  K+R E   
Sbjct: 286 NEEEEDGRGQSEAEKRLKLDEDADGAVSPLRREKDRGSREYPTSNATDTDGTKERTEEVA 345

Query: 662 PDNVP---GYLRPTRTSQIKE 715
            D  P   G LR  +  +++E
Sbjct: 346 LDRTPVTQGLLRVKKEEELQE 366



 Score = 22.2 bits (45), Expect = 6.1
 Identities = 10/35 (28%), Positives = 16/35 (45%)
 Frame = +3

Query: 474  ERSIESIKPQEEYAKVQVAYPQNHQSRDLNHRSDI 578
            +R   +  PQ+   + Q    Q  Q + LNH  D+
Sbjct: 1439 DRKTLTSAPQQPQQQQQQQQQQQQQQQQLNHYPDL 1473


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +2

Query: 629 ESPKQRPENDKPDNVPGYLRPTRTSQIKEETIIHDTEVSSRRG 757
           ES K   EN  P  VPG        Q +    +HD +  S+ G
Sbjct: 323 ESMKTARENPGPPGVPGDHGDHAPKQTEVRFKVHDPKAHSKGG 365


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 14/43 (32%), Positives = 18/43 (41%)
 Frame = +2

Query: 629 ESPKQRPENDKPDNVPGYLRPTRTSQIKEETIIHDTEVSSRRG 757
           ES K   EN  P  VPG        Q +    +HD +  S+ G
Sbjct: 323 ESMKTARENPGPPGVPGDHGDHAPKQTEVRFKVHDPKAHSKGG 365


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 21.8 bits (44), Expect = 8.1
 Identities = 10/31 (32%), Positives = 16/31 (51%)
 Frame = +1

Query: 466 LKPSVQSNQSNLKKNTRKSKSLIHRITSPEI 558
           LK S++     +     K+ SL+H I  P+I
Sbjct: 442 LKSSIEEANLAVSAEREKNVSLLHLIFPPDI 472


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 188,691
Number of Sequences: 438
Number of extensions: 3832
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26824317
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)