Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00045
(714 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44; Bi... 143 4e-33
UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228; Eukary... 140 3e-32
UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;... 111 1e-23
UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep: ... 105 1e-21
UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6; Tr... 97 3e-19
UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 ... 97 4e-19
UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n... 94 3e-18
UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella... 87 4e-16
UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S riboso... 67 5e-10
UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4; Thermoc... 64 2e-09
UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1; ... 64 3e-09
UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6; Euryarc... 53 6e-06
UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1; Nanoarc... 52 1e-05
UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured m... 52 1e-05
UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4; Thermop... 51 2e-05
UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 50 6e-05
UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured m... 49 1e-04
UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13; Euryar... 49 1e-04
UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus N... 47 4e-04
UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofi... 45 0.002
UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4; Euryarc... 44 0.003
UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5; Thermop... 42 0.011
UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarcha... 42 0.015
UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1; Staphylo... 41 0.035
UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6; Thermop... 38 0.25
UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1; ... 35 2.3
UniRef50_A2TY72 Cluster: Putative uncharacterized protein; n=2; ... 34 4.0
UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1; ... 33 9.2
UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-... 33 9.2
>UniRef50_Q92901 Cluster: 60S ribosomal protein L3-like; n=44;
Bilateria|Rep: 60S ribosomal protein L3-like - Homo
sapiens (Human)
Length = 407
Score = 143 bits (346), Expect = 4e-33
Identities = 62/85 (72%), Positives = 73/85 (85%)
Frame = +3
Query: 255 HHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYXEVNNDFVMIK 434
HHRTE+NKKI+RIG+G H +DGK++KNNAST YD++ KSITP+GGFPHY EVNNDFVM+K
Sbjct: 275 HHRTELNKKIFRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLK 334
Query: 435 GCCMGPKKRIITLRKSLRVHTKRAA 509
GC G KKR+ITLRKSL VH R A
Sbjct: 335 GCIAGTKKRVITLRKSLLVHHSRQA 359
Score = 119 bits (287), Expect = 6e-26
Identities = 53/85 (62%), Positives = 62/85 (72%)
Frame = +1
Query: 1 IEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTXKLPRKTHKGLR 180
+ +KV WA+ LEK +PV SVF+Q E+ID I SRWHT KLPRKTHKGLR
Sbjct: 190 VAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKGLR 249
Query: 181 KVACIGAWHPSRVSFTVARAGQKGY 255
KVACIGAWHP+RV ++ARAGQKGY
Sbjct: 250 KVACIGAWHPARVGCSIARAGQKGY 274
Score = 57.2 bits (132), Expect = 4e-07
Identities = 31/66 (46%), Positives = 38/66 (57%)
Frame = +2
Query: 431 QGLLHGT*KAYHYS*KVSACAYKEGCLEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 610
+G + GT K K + +E I LKFIDT+SKFGHGRFQT +K AFMG K
Sbjct: 334 KGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQK 393
Query: 611 KDRIRE 628
K +E
Sbjct: 394 KHLEKE 399
>UniRef50_P39023 Cluster: 60S ribosomal protein L3; n=228;
Eukaryota|Rep: 60S ribosomal protein L3 - Homo sapiens
(Human)
Length = 403
Score = 140 bits (339), Expect = 3e-32
Identities = 63/85 (74%), Positives = 73/85 (85%)
Frame = +3
Query: 255 HHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYXEVNNDFVMIK 434
HHRTE+NKKIY+IGQG KDGK+IKNNAST+YDLS+KSI P+GGF HY EV NDFVM+K
Sbjct: 275 HHRTEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLK 334
Query: 435 GCCMGPKKRIITLRKSLRVHTKRAA 509
GC +G KKR++TLRKSL V TKR A
Sbjct: 335 GCVVGTKKRVLTLRKSLLVQTKRRA 359
Score = 126 bits (304), Expect = 5e-28
Identities = 55/85 (64%), Positives = 65/85 (76%)
Frame = +1
Query: 1 IEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTXKLPRKTHKGLR 180
+ +K+ WARE LE+ +PV+ VF QDEMID I SRWHT KLPRKTH+GLR
Sbjct: 190 VAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKLPRKTHRGLR 249
Query: 181 KVACIGAWHPSRVSFTVARAGQKGY 255
KVACIGAWHP+RV+F+VARAGQKGY
Sbjct: 250 KVACIGAWHPARVAFSVARAGQKGY 274
Score = 70.9 bits (166), Expect = 3e-11
Identities = 33/45 (73%), Positives = 37/45 (82%)
Frame = +2
Query: 497 KEGCLEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 631
K LEKI+LKFIDT+SKFGHGRFQT +K AFMG LKKDRI +E
Sbjct: 356 KRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKKDRIAKE 400
>UniRef50_Q6BEU5 Cluster: Putative uncharacterized protein rpl-3;
n=1; Caenorhabditis elegans|Rep: Putative
uncharacterized protein rpl-3 - Caenorhabditis elegans
Length = 353
Score = 111 bits (268), Expect = 1e-23
Identities = 51/85 (60%), Positives = 65/85 (76%)
Frame = +3
Query: 255 HHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYXEVNNDFVMIK 434
HHRT +N KIYRIG+ ++GK NN STE+DL++K+ITPMGGFP Y VN D++M++
Sbjct: 227 HHRTIINNKIYRIGKSALTEEGK---NNGSTEFDLTQKTITPMGGFPRYGIVNQDYIMLR 283
Query: 435 GCCMGPKKRIITLRKSLRVHTKRAA 509
G +GPKKR+ITLRKSL TKR A
Sbjct: 284 GAVLGPKKRLITLRKSLITQTKRVA 308
Score = 98.7 bits (235), Expect = 1e-19
Identities = 45/65 (69%), Positives = 48/65 (73%)
Frame = +1
Query: 61 VFAQDEMIDCIXXXXXXXXXXXXSRWHTXKLPRKTHKGLRKVACIGAWHPSRVSFTVARA 240
V A +MID I SRWHT KLPRKTHKGLRKVACIGAWHPSRV+FTVARA
Sbjct: 162 VIAHTQMIDTIGVTRGHGFKGVTSRWHTKKLPRKTHKGLRKVACIGAWHPSRVAFTVARA 221
Query: 241 GQKGY 255
GQKG+
Sbjct: 222 GQKGF 226
Score = 62.9 bits (146), Expect = 8e-09
Identities = 29/39 (74%), Positives = 33/39 (84%)
Frame = +2
Query: 512 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 628
EKINLK+IDTSSK GHGRFQT A+K AFMG LK+D + E
Sbjct: 310 EKINLKWIDTSSKTGHGRFQTTAEKRAFMGKLKRDFLAE 348
>UniRef50_Q99N25 Cluster: Ribosomal protein L3; n=2; Theria|Rep:
Ribosomal protein L3 - Mus musculus (Mouse)
Length = 67
Score = 105 bits (252), Expect = 1e-21
Identities = 46/64 (71%), Positives = 55/64 (85%)
Frame = +3
Query: 318 GKVIKNNASTEYDLSEKSITPMGGFPHYXEVNNDFVMIKGCCMGPKKRIITLRKSLRVHT 497
GK+IKNNAST+YDLS+KSI P+GGF HY EV NDF+M+KGC +G KKR++TLRKSL V T
Sbjct: 1 GKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFIMLKGCVVGTKKRVLTLRKSLLVQT 60
Query: 498 KRAA 509
KR A
Sbjct: 61 KRRA 64
>UniRef50_Q581Q2 Cluster: Ribosomal protein L3, putative; n=6;
Trypanosomatidae|Rep: Ribosomal protein L3, putative -
Trypanosoma brucei
Length = 480
Score = 97.5 bits (232), Expect = 3e-19
Identities = 46/85 (54%), Positives = 53/85 (62%)
Frame = +1
Query: 1 IEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTXKLPRKTHKGLR 180
I K++ A+ LEK + +DSVF Q E D RW LPRKTH+GLR
Sbjct: 244 IAQKIELAKSLLEKEVRIDSVFQQSEACDVCAVTKGHGFTGVVKRWGVACLPRKTHRGLR 303
Query: 181 KVACIGAWHPSRVSFTVARAGQKGY 255
KVACIGAWHPSRV +TVARAGQ GY
Sbjct: 304 KVACIGAWHPSRVMYTVARAGQHGY 328
Score = 91.1 bits (216), Expect = 2e-17
Identities = 41/83 (49%), Positives = 57/83 (68%)
Frame = +3
Query: 255 HHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYXEVNNDFVMIK 434
HHRT +NKKIY++G+ + + N A+T YDL+ K+ITPMGGF Y V ND+VM+K
Sbjct: 329 HHRTHLNKKIYQLGRAVSMEP-----NQATTAYDLTAKTITPMGGFVGYGTVRNDYVMLK 383
Query: 435 GCCMGPKKRIITLRKSLRVHTKR 503
G GP++R+ITLR+ + T R
Sbjct: 384 GSVAGPRRRVITLRRPMAPQTSR 406
Score = 63.3 bits (147), Expect = 6e-09
Identities = 29/40 (72%), Positives = 32/40 (80%)
Frame = +2
Query: 512 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 631
EKI LKFIDTSSK GHGRFQT +K+ + G LKKDRIR E
Sbjct: 410 EKITLKFIDTSSKIGHGRFQTKKEKSQWYGPLKKDRIRRE 449
>UniRef50_UPI000061854E Cluster: 60S ribosomal protein L3 (HIV-1 TAR
RNA-binding protein B) (TARBP-B).; n=1; Bos taurus|Rep:
60S ribosomal protein L3 (HIV-1 TAR RNA-binding protein
B) (TARBP-B). - Bos Taurus
Length = 340
Score = 97.1 bits (231), Expect = 4e-19
Identities = 50/93 (53%), Positives = 67/93 (72%), Gaps = 2/93 (2%)
Frame = +3
Query: 231 SSCWSER--LHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYX 404
S W+ + HH T +NKKIY+IGQG K+GK+IKNNAST+Y KSI+P+GG H
Sbjct: 214 SVAWARQKGCHHCT-INKKIYKIGQGYLIKNGKIIKNNASTDYT---KSISPLGGCIHCG 269
Query: 405 EVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKR 503
+V NDFVM+K C +G KKR+++L KSL + TK+
Sbjct: 270 KVTNDFVMLKDCLVGTKKRVLSLCKSLLMRTKQ 302
Score = 57.6 bits (133), Expect = 3e-07
Identities = 25/40 (62%), Positives = 30/40 (75%)
Frame = +2
Query: 497 KEGCLEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 616
K+ L+K+N KFIDT+SKFGHG FQ +K FMG LKKD
Sbjct: 301 KQQTLQKVNFKFIDTTSKFGHGCFQIVGEKKGFMGPLKKD 340
Score = 44.0 bits (99), Expect = 0.004
Identities = 27/81 (33%), Positives = 39/81 (48%)
Frame = +1
Query: 10 KVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTXKLPRKTHKGLRKVA 189
K+ WA + LE+ +PV+ +F + I S W+T K+P KTH+ + A
Sbjct: 149 KLDWAHKKLEQQVPVNHIFRVRRLF-VIGTTKGKHYKGISSHWYTKKVPWKTHQEFHEAA 207
Query: 190 CIGAWHPSRVSFTVARAGQKG 252
CI W +VA A QKG
Sbjct: 208 CI--WD----GLSVAWARQKG 222
>UniRef50_UPI0000503B42 Cluster: UPI0000503B42 related cluster; n=2;
Rattus norvegicus|Rep: UPI0000503B42 UniRef100 entry -
Rattus norvegicus
Length = 380
Score = 94.3 bits (224), Expect = 3e-18
Identities = 49/88 (55%), Positives = 61/88 (69%)
Frame = +3
Query: 255 HHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYXEVNNDFVMIK 434
HH + NKKI +IGQG KDGK+IKNNA TEY LS+KSI +GGF HY EV NDF+ +K
Sbjct: 254 HHNGD-NKKICKIGQGYLIKDGKLIKNNAPTEYHLSDKSINLLGGFVHYGEVTNDFIRLK 312
Query: 435 GCCMGPKKRIITLRKSLRVHTKRAA*KR 518
GC + KK +T+ K L V T + A K+
Sbjct: 313 GCAVRTKKH-LTICKYLLVQTIQWALKK 339
Score = 49.2 bits (112), Expect = 1e-04
Identities = 25/62 (40%), Positives = 34/62 (54%)
Frame = +1
Query: 70 QDEMIDCIXXXXXXXXXXXXSRWHTXKLPRKTHKGLRKVACIGAWHPSRVSFTVARAGQK 249
QDE+ID I P + +G K+ C+GAWHP+RV+F+VA+ GQK
Sbjct: 193 QDEIIDVIKETKGNGYKGVTRVDIQRNCPERPIEGCPKL-CVGAWHPARVTFSVAQVGQK 251
Query: 250 GY 255
GY
Sbjct: 252 GY 253
Score = 44.0 bits (99), Expect = 0.004
Identities = 22/41 (53%), Positives = 27/41 (65%)
Frame = +2
Query: 509 LEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 631
L+KI+ K DT+ K GHG FQT K AF+G LKK+ EE
Sbjct: 337 LKKIDPKLNDTTYKVGHGCFQTTEGKRAFIGPLKKECTAEE 377
>UniRef50_Q3LWC1 Cluster: Ribosomal protein L3; n=1; Bigelowiella
natans|Rep: Ribosomal protein L3 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 370
Score = 87.0 bits (206), Expect = 4e-16
Identities = 38/72 (52%), Positives = 51/72 (70%)
Frame = +1
Query: 40 KPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTXKLPRKTHKGLRKVACIGAWHPSRV 219
K I ++S+F ++++ID I SRW +LPRKTH+GLRKVACIG W PSRV
Sbjct: 185 KKIYINSIFHENDIIDAIGITKGHGTKGVVSRWGITRLPRKTHRGLRKVACIGPWTPSRV 244
Query: 220 SFTVARAGQKGY 255
++T++RAGQKGY
Sbjct: 245 AWTISRAGQKGY 256
Score = 57.2 bits (132), Expect = 4e-07
Identities = 32/78 (41%), Positives = 46/78 (58%)
Frame = +3
Query: 255 HHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYXEVNNDFVMIK 434
H RT NKKIY+IG +++ N+ S D KS+ MGGF + +NND+++IK
Sbjct: 257 HKRTLFNKKIYKIGS---EENFSYYSNSLS---DSIVKSVNCMGGFKKFGFINNDYLIIK 310
Query: 435 GCCMGPKKRIITLRKSLR 488
G G KR I LRK+++
Sbjct: 311 GSMTGSSKRPILLRKNIK 328
Score = 41.5 bits (93), Expect = 0.020
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = +2
Query: 512 EKINLKFIDTSSKFGHGRFQTPADKAAFM 598
EKI LK++DTSSK GHGR+++ ADK + M
Sbjct: 337 EKIILKYVDTSSKRGHGRYESSADKFSKM 365
>UniRef50_UPI0000D9B08A Cluster: PREDICTED: similar to 60S ribosomal
protein L3 (L4); n=1; Macaca mulatta|Rep: PREDICTED:
similar to 60S ribosomal protein L3 (L4) - Macaca
mulatta
Length = 153
Score = 66.9 bits (156), Expect = 5e-10
Identities = 33/52 (63%), Positives = 38/52 (73%)
Frame = +2
Query: 476 KVSACAYKEGCLEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIREE 631
K S K LEKI+LKFIDT+SKFGHGRFQT +K AFMG LKKD+ +E
Sbjct: 99 KSSLVQTKWRALEKIDLKFIDTTSKFGHGRFQTIGEKKAFMGPLKKDQTAKE 150
>UniRef50_Q8TZZ8 Cluster: 50S ribosomal protein L3P; n=4;
Thermococcaceae|Rep: 50S ribosomal protein L3P -
Pyrococcus furiosus
Length = 365
Score = 64.5 bits (150), Expect = 2e-09
Identities = 37/83 (44%), Positives = 52/83 (62%)
Frame = +3
Query: 255 HHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYXEVNNDFVMIK 434
HHRTE+NK++ IG+ +GK +K + +TE + ITP GGFPHY V +DF+MI
Sbjct: 277 HHRTELNKRLIAIGE-----NGK-LKLDENTEIE-----ITPKGGFPHYGIVRSDFMMIA 325
Query: 435 GCCMGPKKRIITLRKSLRVHTKR 503
G G KRII +R ++R K+
Sbjct: 326 GSVPGAIKRIIRVRPAIRPPKKK 348
Score = 63.3 bits (147), Expect = 6e-09
Identities = 31/85 (36%), Positives = 42/85 (49%)
Frame = +1
Query: 1 IEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTXKLPRKTHKGLR 180
+E+K + +E L K + V V + E++D I RW K KG R
Sbjct: 192 VEEKFNYIKEKLGKELRVGEVLKEGELLDVIAVTKGKGTQGPVKRWGIKLRAHKDSKGRR 251
Query: 181 KVACIGAWHPSRVSFTVARAGQKGY 255
KV IG WHP+RV +TV AGQ G+
Sbjct: 252 KVGSIGPWHPARVMWTVPMAGQMGF 276
>UniRef50_Q59LS0 Cluster: Putative uncharacterized protein; n=1;
Candida albicans|Rep: Putative uncharacterized protein -
Candida albicans (Yeast)
Length = 173
Score = 64.1 bits (149), Expect = 3e-09
Identities = 33/85 (38%), Positives = 50/85 (58%)
Frame = -1
Query: 255 VTFLTSTSYSERHPRRMPSSNAGNFPKTLVCLTG*LXCVPTRSDTFVSFALGDTNAVNHF 76
VT LTS+ + MPS+N N +T V L+ P+ DT + GD+N +NHF
Sbjct: 3 VTVLTSSGNGPVNVSWMPSTNTSNLSQTSVGLSWQFLGTPSVGDTLETVTFGDSNDINHF 62
Query: 75 ILGKHRIDRDRFLQMFSGPFHFVLD 1
IL ++R++R+ F ++F GP +FV D
Sbjct: 63 ILFENRVNRNFFFKVFFGPVNFVGD 87
>UniRef50_P54014 Cluster: 50S ribosomal protein L3P; n=6;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanococcus jannaschii
Length = 335
Score = 53.2 bits (122), Expect = 6e-06
Identities = 31/78 (39%), Positives = 42/78 (53%)
Frame = +3
Query: 255 HHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYXEVNNDFVMIK 434
H RTE NK+I +IG NN ITP GGF HY + N++V++K
Sbjct: 256 HQRTEYNKRILKIG------------NNGD--------EITPKGGFLHYGVIRNNYVVLK 295
Query: 435 GCCMGPKKRIITLRKSLR 488
G GP KR+I LR+++R
Sbjct: 296 GSVQGPAKRLIVLRRAIR 313
Score = 50.0 bits (114), Expect = 6e-05
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 IEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTX-KLPRKTHKGL 177
IE+++ +A+E L K + + VF + E++D I RW + + KG+
Sbjct: 169 IEERLNYAKEILGKQLNITDVFQEGELVDTIGVTKGKGFQGQVKRWGVKIQFGKHARKGV 228
Query: 178 -RKVACIGAWHPSRVSFTVARAGQKGY 255
R V IG W P V ++V GQ GY
Sbjct: 229 GRHVGSIGPWQPKMVMWSVPMPGQMGY 255
>UniRef50_P60458 Cluster: 50S ribosomal protein L3P; n=1;
Nanoarchaeum equitans|Rep: 50S ribosomal protein L3P -
Nanoarchaeum equitans
Length = 321
Score = 52.4 bits (120), Expect = 1e-05
Identities = 26/85 (30%), Positives = 42/85 (49%)
Frame = +1
Query: 1 IEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTXKLPRKTHKGLR 180
+ K+++A L K + ++ VF + + +D I R+H + K+ KG+R
Sbjct: 162 VNKKLEYALSLLGKELSINDVFKEGQYVDVIAVTKGKGFQGVIKRFHVHRRQHKSEKGVR 221
Query: 181 KVACIGAWHPSRVSFTVARAGQKGY 255
KV IG+ P R+ TV GQ GY
Sbjct: 222 KVGAIGSRGPGRIFPTVPMPGQMGY 246
Score = 37.5 bits (83), Expect = 0.32
Identities = 18/54 (33%), Positives = 32/54 (59%)
Frame = +3
Query: 384 GGFPHYXEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAA*KRSTSNSLTPR 545
GG+ Y +V +++KG GP+KR+I LR+++R K+ + SL+P+
Sbjct: 267 GGWVRYGQVIGPTILLKGSVPGPRKRLIILREAIRPPRKQEKVEGIEYISLSPK 320
>UniRef50_Q673S9 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote DeepAnt-JyKC7|Rep:
Ribosomal protein L3 - uncultured marine group II
euryarchaeote DeepAnt-JyKC7
Length = 358
Score = 52.0 bits (119), Expect = 1e-05
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +3
Query: 270 MNKKIYRIGQ-GIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYXEVNNDFVMIKGCCM 446
+ K I + GQ G HK+ + + E +TP GGF HY EV N +++++G
Sbjct: 266 VRKTIRQAGQMGYHKRTE--LNKRILRISNPGESDVTPAGGFLHYGEVTNPYMVLEGSLP 323
Query: 447 GPKKRIITLRKSLRVHT 497
GP KR++ R +R HT
Sbjct: 324 GPAKRLLRFRDPVRPHT 340
Score = 39.9 bits (89), Expect = 0.061
Identities = 22/82 (26%), Positives = 36/82 (43%)
Frame = +1
Query: 10 KVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTXKLPRKTHKGLRKVA 189
K++WA E L I +D V+ + +D + R+ L K K R++
Sbjct: 197 KLEWAHERLGGEIGIDDVYEAGKELDVVGITKGKGWQGVIKRFGVKLLSHKNSKRRRQIG 256
Query: 190 CIGAWHPSRVSFTVARAGQKGY 255
+G + V T+ +AGQ GY
Sbjct: 257 NMGDFGTGYVRKTIRQAGQMGY 278
>UniRef50_Q97BX7 Cluster: 50S ribosomal protein L3P; n=4;
Thermoplasmatales|Rep: 50S ribosomal protein L3P -
Thermoplasma volcanium
Length = 331
Score = 51.2 bits (117), Expect = 2e-05
Identities = 25/85 (29%), Positives = 39/85 (45%)
Frame = +1
Query: 1 IEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTXKLPRKTHKGLR 180
++++ ++A HL K I + + +D + R+ LPRK K R
Sbjct: 165 VKERFEYATAHLGKTIRFEDFSKPGKFVDVLSVTKGKGFTGHVQRFGVKLLPRKNRKHRR 224
Query: 181 KVACIGAWHPSRVSFTVARAGQKGY 255
+ +G WHP V TV +AGQ GY
Sbjct: 225 MIGTLGPWHPDWVRNTVPQAGQMGY 249
Score = 41.1 bits (92), Expect = 0.026
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 2/58 (3%)
Frame = +3
Query: 321 KVIKNNASTEYDLSEKS--ITPMGGFPHYXEVNNDFVMIKGCCMGPKKRIITLRKSLR 488
+ I N +Y E + I GGF HY V ND+V++ G GP KR+I +R R
Sbjct: 252 RTISNVRVLKYSKGEDADTINVRGGFLHYGLVKNDYVLLFGSVPGPAKRLIKMRDPAR 309
>UniRef50_Q0W1Y9 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Uncultured methanogenic archaeon RC-I
Length = 337
Score = 50.0 bits (114), Expect = 6e-05
Identities = 19/41 (46%), Positives = 29/41 (70%)
Frame = +3
Query: 366 KSITPMGGFPHYXEVNNDFVMIKGCCMGPKKRIITLRKSLR 488
+ ITP GGF HY + ND++M+KG GP KR++ +R ++R
Sbjct: 276 EEITPAGGFLHYGLIRNDYIMLKGSIPGPVKRMVRIRPAVR 316
Score = 39.1 bits (87), Expect = 0.11
Identities = 22/84 (26%), Positives = 38/84 (45%), Gaps = 2/84 (2%)
Frame = +1
Query: 10 KVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTXKLPRKTHKGLRK-- 183
+ ++A+ + K + + VFA E++D RW RK + +K
Sbjct: 175 RFEFAKSLMGKAVGIKDVFAPGELVDVSAITKGYGTQGPVVRWGIATQKRKHARTGKKRH 234
Query: 184 VACIGAWHPSRVSFTVARAGQKGY 255
V +G W+P R+ + V + GQ GY
Sbjct: 235 VGNLGPWNPHRIRWQVPQLGQTGY 258
>UniRef50_Q2QAT1 Cluster: Ribosomal protein L3; n=1; uncultured
marine group II euryarchaeote HF70_59C08|Rep: Ribosomal
protein L3 - uncultured marine group II euryarchaeote
HF70_59C08
Length = 338
Score = 49.2 bits (112), Expect = 1e-04
Identities = 31/76 (40%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Frame = +3
Query: 270 MNKKIYRIGQ-GIHKKD--GKVIKNNASTEYDLSEKSITPMGGFPHYXEVNNDFVMIKGC 440
+ K I + GQ G H++ K I A E E ITP GGF HY EV N +++I+G
Sbjct: 246 VRKTIRQAGQTGYHQRTEYNKRILRIAGEE----ESQITPAGGFLHYGEVKNHYMIIQGS 301
Query: 441 CMGPKKRIITLRKSLR 488
GP KR+I R + R
Sbjct: 302 LPGPAKRLIRFRDAAR 317
Score = 37.1 bits (82), Expect = 0.43
Identities = 22/82 (26%), Positives = 35/82 (42%)
Frame = +1
Query: 10 KVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTXKLPRKTHKGLRKVA 189
++ WA E L + + ++ VF ID I R+ L K K R++
Sbjct: 177 QLDWAAEKLGEELGIEDVFESGSDIDVIGVTKGYGNQGVVRRFGVKLLSHKNSKRRRQIG 236
Query: 190 CIGAWHPSRVSFTVARAGQKGY 255
+G + V T+ +AGQ GY
Sbjct: 237 NMGDFGTGYVRKTIRQAGQTGY 258
>UniRef50_Q8TY90 Cluster: 50S ribosomal protein L3P; n=13;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Methanopyrus kandleri
Length = 361
Score = 49.2 bits (112), Expect = 1e-04
Identities = 30/78 (38%), Positives = 42/78 (53%)
Frame = +3
Query: 255 HHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYXEVNNDFVMIK 434
H RTE NK+I +IG+ DG+ +TP GGF +Y V D++MI
Sbjct: 262 HQRTEHNKRILKIGE-----DGE---------------EVTPRGGFVNYGVVRGDYIMIH 301
Query: 435 GCCMGPKKRIITLRKSLR 488
G GPKKR+I +R ++R
Sbjct: 302 GTVPGPKKRLIRVRPAVR 319
Score = 42.7 bits (96), Expect = 0.009
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 2/87 (2%)
Frame = +1
Query: 1 IEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTXKLPRKTHKGL- 177
+ ++ ++A E L + I VF + E++D RW RKT +
Sbjct: 175 VRERFEYAVEILSEEIRAKDVFDEGEIVDVSAITKGKGFQGVVKRWGVTIQDRKTQRKQK 234
Query: 178 -RKVACIGAWHPSRVSFTVARAGQKGY 255
R + IG PSRV +TV AGQ GY
Sbjct: 235 GRHIGSIGPITPSRVRWTVPMAGQVGY 261
>UniRef50_A7DSZ4 Cluster: Ribosomal protein L3; n=1; Candidatus
Nitrosopumilus maritimus SCM1|Rep: Ribosomal protein L3
- Candidatus Nitrosopumilus maritimus SCM1
Length = 331
Score = 47.2 bits (107), Expect = 4e-04
Identities = 24/77 (31%), Positives = 35/77 (45%)
Frame = +1
Query: 25 REHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTXKLPRKTHKGLRKVACIGAW 204
+E L K I +D +F +D RW+ K K+ K +R+V +G
Sbjct: 178 KELLGKEIKIDQIFETGASVDVAAITKGKGWQGVLKRWNVKKKQHKSRKTVREVGSLGPI 237
Query: 205 HPSRVSFTVARAGQKGY 255
P V +TV RAGQ G+
Sbjct: 238 SPQSVMYTVPRAGQFGF 254
Score = 41.5 bits (93), Expect = 0.020
Identities = 18/45 (40%), Positives = 26/45 (57%)
Frame = +3
Query: 354 DLSEKSITPMGGFPHYXEVNNDFVMIKGCCMGPKKRIITLRKSLR 488
D + I P GGF H+ V DF+++KG G +R+I LR +R
Sbjct: 271 DDDKLKINPDGGFKHFGLVKGDFIVLKGSVPGAYRRLIKLRSQIR 315
>UniRef50_A1RWR0 Cluster: 50S ribosomal protein L3; n=1; Thermofilum
pendens Hrk 5|Rep: 50S ribosomal protein L3 -
Thermofilum pendens (strain Hrk 5)
Length = 334
Score = 45.2 bits (102), Expect = 0.002
Identities = 27/78 (34%), Positives = 41/78 (52%)
Frame = +3
Query: 255 HHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYXEVNNDFVMIK 434
H RTE NK+I ++G D + S K I P GG+PHY V + F++++
Sbjct: 253 HQRTEYNKRILKVG------DAE------------SLKEINPPGGWPHYGLVRSQFIIVE 294
Query: 435 GCCMGPKKRIITLRKSLR 488
G G KR++ LR ++R
Sbjct: 295 GSVPGAVKRLVRLRHAIR 312
>UniRef50_Q9HPD4 Cluster: 50S ribosomal protein L3P; n=4;
Euryarchaeota|Rep: 50S ribosomal protein L3P -
Halobacterium salinarium (Halobacterium halobium)
Length = 335
Score = 44.4 bits (100), Expect = 0.003
Identities = 16/38 (42%), Positives = 27/38 (71%)
Frame = +3
Query: 375 TPMGGFPHYXEVNNDFVMIKGCCMGPKKRIITLRKSLR 488
TP GGFP+Y EV+ + ++KG GP++R++ R ++R
Sbjct: 277 TPDGGFPNYGEVDGPYTLVKGSVPGPEQRLVRFRPAVR 314
Score = 35.9 bits (79), Expect = 0.99
Identities = 22/67 (32%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = +1
Query: 61 VFAQDEMIDCIXXXXXXXXXXXXSRWHTXKLPRK-THKGLRK-VACIGAWHPSRVSFTVA 234
VF E D RW K K +G R+ + +G W+PSRV TV
Sbjct: 191 VFRAGEFTDAAGITKGKGTQGPVKRWGVQKRKGKHARQGWRRRIGNLGPWNPSRVRSTVP 250
Query: 235 RAGQKGY 255
+ GQ GY
Sbjct: 251 QQGQTGY 257
>UniRef50_Q9UXA8 Cluster: 50S ribosomal protein L3P; n=5;
Thermoprotei|Rep: 50S ribosomal protein L3P - Sulfolobus
solfataricus
Length = 351
Score = 42.3 bits (95), Expect = 0.011
Identities = 28/78 (35%), Positives = 37/78 (47%)
Frame = +3
Query: 255 HHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYXEVNNDFVMIK 434
H RTE NK+I +IG K I P GGF Y V N +V+++
Sbjct: 273 HRRTEYNKRIIKIGD--------------------EPKEINPAGGFVRYGIVRNTYVLLE 312
Query: 435 GCCMGPKKRIITLRKSLR 488
G +G KKR I LR+ +R
Sbjct: 313 GSILGSKKRPIFLREPVR 330
>UniRef50_A0RVX4 Cluster: 50S ribosomal protein L3; n=1; Cenarchaeum
symbiosum|Rep: 50S ribosomal protein L3 - Cenarchaeum
symbiosum
Length = 328
Score = 41.9 bits (94), Expect = 0.015
Identities = 16/49 (32%), Positives = 29/49 (59%)
Frame = +3
Query: 363 EKSITPMGGFPHYXEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAA 509
+ +I P GG+ H+ V D++++KG G +R++ LR +R KR +
Sbjct: 271 DDAINPSGGYKHFGMVKGDYIVLKGSVPGTYRRLVKLRAQIRNAPKRTS 319
Score = 33.9 bits (74), Expect = 4.0
Identities = 18/85 (21%), Positives = 35/85 (41%)
Frame = +1
Query: 1 IEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTXKLPRKTHKGLR 180
++++ + ++ L K + V +D R + K+ K +R
Sbjct: 168 MKERFAYLKDLLGKTVKASDVLEPGAGVDVAAITKGKGWQGVIQRMGAKRKQHKSRKTVR 227
Query: 181 KVACIGAWHPSRVSFTVARAGQKGY 255
++ +G P V +TV RAGQ G+
Sbjct: 228 ELGSLGPISPQNVMYTVPRAGQMGF 252
>UniRef50_A3DNA4 Cluster: 50S ribosomal protein L3; n=1;
Staphylothermus marinus F1|Rep: 50S ribosomal protein L3
- Staphylothermus marinus (strain ATCC 43588 / DSM 3639
/ F1)
Length = 395
Score = 40.7 bits (91), Expect = 0.035
Identities = 16/39 (41%), Positives = 25/39 (64%)
Frame = +3
Query: 372 ITPMGGFPHYXEVNNDFVMIKGCCMGPKKRIITLRKSLR 488
+TP GGF Y V ++M+ G +GP+KR++ LR +R
Sbjct: 334 VTPKGGFLGYGIVYGPYIMLHGSIIGPRKRLLVLRHPIR 372
>UniRef50_Q9YFM2 Cluster: 50S ribosomal protein L3P; n=6;
Thermoprotei|Rep: 50S ribosomal protein L3P - Aeropyrum
pernix
Length = 344
Score = 37.9 bits (84), Expect = 0.25
Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
Frame = +1
Query: 19 WAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTXKLPR--KTHKGLRKVAC 192
+A++ L I V+ VF + +++D I RW +LPR K KG R+
Sbjct: 182 YAKDVLGNLIAVNDVFEEGQLVDVIAVTKGKGFQGVIKRWGVKELPRWHKHRKGSRR--- 238
Query: 193 IGAWHPSRVSF-TVARAGQKGYITVLK*TRKSIVLDKESTK 312
IGA R +F +AGQ G+ + ++ +++D + K
Sbjct: 239 IGARSHGRSTFWETPQAGQTGFHRRTEYNKRILMIDDDGYK 279
Score = 37.5 bits (83), Expect = 0.32
Identities = 17/39 (43%), Positives = 23/39 (58%)
Frame = +3
Query: 372 ITPMGGFPHYXEVNNDFVMIKGCCMGPKKRIITLRKSLR 488
+TP GGF Y V + FVM+ G G KR I +R ++R
Sbjct: 280 VTPAGGFLRYGVVRSTFVMLSGSIPGTPKRPIVMRWAIR 318
>UniRef50_UPI00015BB2A1 Cluster: LSU ribosomal protein L3P; n=1;
Ignicoccus hospitalis KIN4/I|Rep: LSU ribosomal protein
L3P - Ignicoccus hospitalis KIN4/I
Length = 358
Score = 34.7 bits (76), Expect = 2.3
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 384 GGFPHYXEVNNDFVMIKGCCMGPKKRIITLRKSLR 488
GG+ HY V + +V++KG GP KR I +R +R
Sbjct: 301 GGWLHYGLVKSKYVVLKGSVFGPPKRPIIMRLPVR 335
>UniRef50_A2TY72 Cluster: Putative uncharacterized protein; n=2;
Polaribacter|Rep: Putative uncharacterized protein -
Polaribacter dokdonensis MED152
Length = 587
Score = 33.9 bits (74), Expect = 4.0
Identities = 24/85 (28%), Positives = 38/85 (44%)
Frame = +3
Query: 246 ERLHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYXEVNNDFV 425
+ +H E++K +G+GI+ + + N S YD S GF + N F
Sbjct: 141 QNIHLVAEISKSRPYVGEGIYVEYRLYVSENVSV-YDTSVTEAPQYNGFWNQEIKINGFP 199
Query: 426 MIKGCCMGPKKRIITLRKSLRVHTK 500
+ G G R I L+K+L + TK
Sbjct: 200 VKMGKYNGENYRYIVLQKALLIPTK 224
>UniRef50_Q8I4X9 Cluster: Putative uncharacterized protein; n=1;
Plasmodium falciparum 3D7|Rep: Putative uncharacterized
protein - Plasmodium falciparum (isolate 3D7)
Length = 1482
Score = 32.7 bits (71), Expect = 9.2
Identities = 18/72 (25%), Positives = 36/72 (50%)
Frame = -2
Query: 473 KSNDTLFRSHAATLDHHKVVVYFXIMGETSHWCNGFLRQVILSRCIVFNNFAILFVDSLS 294
+ N+ + TL H ++ YF + +SH ++I + +++NNFA +F+ L
Sbjct: 450 QKNNIKYNIKWLTLFFHSLIQYFVYLNNSSHILINHKDKIIFIKHLLYNNFAQMFLKYL- 508
Query: 293 NTIDFLVHFSTV 258
D V+F+ +
Sbjct: 509 --CDNYVYFTPI 518
>UniRef50_Q7Z5Z5 Cluster: NPC-A-12; n=1; Homo sapiens|Rep: NPC-A-12
- Homo sapiens (Human)
Length = 103
Score = 32.7 bits (71), Expect = 9.2
Identities = 16/31 (51%), Positives = 18/31 (58%)
Frame = +3
Query: 513 KRSTSNSLTPRPSSVMVDSRRRLTRLHSWVH 605
+R T +SLTP PS M SR R HSW H
Sbjct: 73 RRLTLSSLTPPPSLAMAASRPWRRRKHSWDH 103
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 728,617,096
Number of Sequences: 1657284
Number of extensions: 14571641
Number of successful extensions: 33017
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 32016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33006
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 57438021881
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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