Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00045
         (714 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...   113   3e-26
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...   113   3e-26
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    29   0.87 
SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr...    27   3.5  

>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  113 bits (271), Expect = 3e-26
 Identities = 49/86 (56%), Positives = 60/86 (69%)
 Frame = +1

Query: 1   IEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTXKLPRKTHKGLR 180
           + DKV+WAREH EK + + S F Q+EMID I            +RW T +LPRKTH+GLR
Sbjct: 188 VADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLR 247

Query: 181 KVACIGAWHPSRVSFTVARAGQKGYI 258
           KVACIGAWHP+ V +TVARAG  GY+
Sbjct: 248 KVACIGAWHPANVQWTVARAGNAGYM 273



 Score = 96.7 bits (230), Expect = 3e-21
 Identities = 49/84 (58%), Positives = 57/84 (67%)
 Frame = +3

Query: 258 HRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYXEVNNDFVMIKG 437
           HRT++N KIYRIG G    D K    NAST++D +EK ITPMGGF  Y  V NDFVM+ G
Sbjct: 274 HRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNG 326

Query: 438 CCMGPKKRIITLRKSLRVHTKRAA 509
              GP KR++TLRKSL  HT R A
Sbjct: 327 ATPGPVKRVLTLRKSLLTHTSRKA 350



 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 26/36 (72%), Positives = 32/36 (88%)
 Frame = +2

Query: 509 LEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 616
           LE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 351 LEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score =  113 bits (271), Expect = 3e-26
 Identities = 49/86 (56%), Positives = 60/86 (69%)
 Frame = +1

Query: 1   IEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTXKLPRKTHKGLR 180
           + DKV+WAREH EK + + S F Q+EMID I            +RW T +LPRKTH+GLR
Sbjct: 188 VADKVEWAREHFEKTVDIKSTFEQNEMIDVIGVTRGKGNEGTTARWGTKRLPRKTHRGLR 247

Query: 181 KVACIGAWHPSRVSFTVARAGQKGYI 258
           KVACIGAWHP+ V +TVARAG  GY+
Sbjct: 248 KVACIGAWHPANVQWTVARAGNAGYM 273



 Score = 96.7 bits (230), Expect = 3e-21
 Identities = 49/84 (58%), Positives = 57/84 (67%)
 Frame = +3

Query: 258 HRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYXEVNNDFVMIKG 437
           HRT++N KIYRIG G    D K    NAST++D +EK ITPMGGF  Y  V NDFVM+ G
Sbjct: 274 HRTQLNSKIYRIGAG---DDAK----NASTDFDATEKRITPMGGFVRYGVVENDFVMLNG 326

Query: 438 CCMGPKKRIITLRKSLRVHTKRAA 509
              GP KR++TLRKSL  HT R A
Sbjct: 327 ATPGPVKRVLTLRKSLLTHTSRKA 350



 Score = 61.7 bits (143), Expect = 1e-10
 Identities = 26/36 (72%), Positives = 32/36 (88%)
 Frame = +2

Query: 509 LEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKD 616
           LE ++LK+IDT+SKFGHGRFQTPA+   F+GTLKKD
Sbjct: 351 LEPVSLKWIDTASKFGHGRFQTPAEAKQFLGTLKKD 386


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 28.7 bits (61), Expect = 0.87
 Identities = 9/27 (33%), Positives = 19/27 (70%)
 Frame = +3

Query: 219 VVHCSSCWSERLHHRTEMNKKIYRIGQ 299
           +++ S  W ERLH+  +++ K +R+G+
Sbjct: 338 LINISRDWDERLHYELQVSGKSFRLGE 364


>SPBC21.02 |||TLDc domain protein 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 511

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +1

Query: 595 HGYTQEGSYSRRSCGYHNPS 654
           HGY+   +  R+ C YHNPS
Sbjct: 307 HGYSMY-ALERKMCNYHNPS 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,027,281
Number of Sequences: 5004
Number of extensions: 61972
Number of successful extensions: 174
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)