Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00045
         (714 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0435 + 3428552-3428636,3429242-3429352,3429434-3429738,342...   111   5e-25
11_01_0427 + 3274817-3274901,3275587-3275697,3275979-3276283,327...   111   5e-25
01_06_1261 - 35826513-35828941,35829201-35829294                       29   3.7  

>12_01_0435 +
           3428552-3428636,3429242-3429352,3429434-3429738,
           3429821-3430230,3430323-3430556,3430934-3431378,
           3432300-3432390,3433292-3433518,3433786-3433861,
           3434009-3434134,3434221-3434384
          Length = 757

 Score =  111 bits (267), Expect = 5e-25
 Identities = 51/85 (60%), Positives = 60/85 (70%)
 Frame = +1

Query: 1   IEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTXKLPRKTHKGLR 180
           I DKV +  +  EK IPVD+VF +DEMID I            +RW   +LPRKTH+GLR
Sbjct: 191 IADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLR 250

Query: 181 KVACIGAWHPSRVSFTVARAGQKGY 255
           KVACIGAWHP+RVS+TVARAGQ GY
Sbjct: 251 KVACIGAWHPARVSYTVARAGQNGY 275



 Score =  109 bits (261), Expect = 3e-24
 Identities = 51/85 (60%), Positives = 63/85 (74%)
 Frame = +3

Query: 255 HHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYXEVNNDFVMIK 434
           HHRTEMNKK+Y+IG     K G+   + A TE+D +EK ITPMGGFPHY  V  D++MIK
Sbjct: 276 HHRTEMNKKVYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIK 329

Query: 435 GCCMGPKKRIITLRKSLRVHTKRAA 509
           GCC+GPKKR++TLR+SL   T R A
Sbjct: 330 GCCVGPKKRVVTLRQSLLKQTSRLA 354



 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 21/26 (80%), Positives = 23/26 (88%)
 Frame = +2

Query: 509 LEKINLKFIDTSSKFGHGRFQTPADK 586
           LE+I LKFIDTSSKFGHGRFQT  +K
Sbjct: 355 LEEIKLKFIDTSSKFGHGRFQTTDEK 380


>11_01_0427 +
           3274817-3274901,3275587-3275697,3275979-3276283,
           3276406-3276815,3276942-3277200
          Length = 389

 Score =  111 bits (267), Expect = 5e-25
 Identities = 51/85 (60%), Positives = 60/85 (70%)
 Frame = +1

Query: 1   IEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTXKLPRKTHKGLR 180
           I DKV +  +  EK IPVD+VF +DEMID I            +RW   +LPRKTH+GLR
Sbjct: 191 IADKVDYGYKFFEKEIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLR 250

Query: 181 KVACIGAWHPSRVSFTVARAGQKGY 255
           KVACIGAWHP+RVS+TVARAGQ GY
Sbjct: 251 KVACIGAWHPARVSYTVARAGQNGY 275



 Score =  109 bits (261), Expect = 3e-24
 Identities = 51/85 (60%), Positives = 63/85 (74%)
 Frame = +3

Query: 255 HHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPMGGFPHYXEVNNDFVMIK 434
           HHRTEMNKK+Y+IG     K G+   + A TE+D +EK ITPMGGFPHY  V  D++MIK
Sbjct: 276 HHRTEMNKKVYKIG-----KSGQE-SHAACTEFDRTEKDITPMGGFPHYGVVKGDYLMIK 329

Query: 435 GCCMGPKKRIITLRKSLRVHTKRAA 509
           GCC+GPKKR++TLR+SL   T R A
Sbjct: 330 GCCVGPKKRVVTLRQSLLKQTSRLA 354



 Score = 54.8 bits (126), Expect = 6e-08
 Identities = 25/34 (73%), Positives = 27/34 (79%)
 Frame = +2

Query: 509 LEKINLKFIDTSSKFGHGRFQTPADKAAFMGTLK 610
           LE+I LKFIDTSSKFGHGRFQT  +K  F G LK
Sbjct: 355 LEEIKLKFIDTSSKFGHGRFQTTDEKQRFFGKLK 388


>01_06_1261 - 35826513-35828941,35829201-35829294
          Length = 840

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/49 (28%), Positives = 27/49 (55%)
 Frame = +3

Query: 219 VVHCSSCWSERLHHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSE 365
           ++  SS  SERL    E+ + I RIG+ +H ++G + +     +  L++
Sbjct: 376 LIEDSSKLSERLKQVEEVLQTIQRIGKSVHSENGNIHQQLTEVDDSLND 424


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,101,916
Number of Sequences: 37544
Number of extensions: 415077
Number of successful extensions: 895
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 868
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)