Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00045
(714 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0) 118 5e-27
SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.) 92 5e-19
SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34) 75 6e-14
SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.1
SB_57037| Best HMM Match : RVT_1 (HMM E-Value=3.4e-15) 29 4.9
SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16) 29 4.9
SB_37487| Best HMM Match : RVT_1 (HMM E-Value=0.03) 29 4.9
SB_33284| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34) 29 4.9
SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40) 29 4.9
SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36) 29 4.9
SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_23276| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.9
SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0) 29 4.9
SB_13763| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_51931| Best HMM Match : Ribosomal_L3 (HMM E-Value=0)
Length = 338
Score = 118 bits (284), Expect = 5e-27
Identities = 58/111 (52%), Positives = 70/111 (63%)
Frame = +1
Query: 1 IEDKVKWAREHLEKPIPVDSVFAQDEMIDCIXXXXXXXXXXXXSRWHTXKLPRKTHKGLR 180
+ +KV W RE LE P PV VF+ DEMID I RW T KLPRKTHKGLR
Sbjct: 190 VAEKVDWCRERLENPAPVRKVFSPDEMIDVIGVTKGHGFKGVTYRWGTKKLPRKTHKGLR 249
Query: 181 KVACIGAWHPSRVSFTVARAGQKGYITVLK*TRKSIVLDKESTKRMAKLLK 333
KVACIGAWHP+RVSF+VARAGQ GY + +K + + K+ K++K
Sbjct: 250 KVACIGAWHPARVSFSVARAGQAGYHHRTELNKKIYRIGQGIHKKDGKVIK 300
Score = 90.2 bits (214), Expect = 1e-18
Identities = 39/43 (90%), Positives = 43/43 (100%)
Frame = +3
Query: 255 HHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 383
HHRTE+NKKIYRIGQGIHKKDGKVIKNNASTEYDL++KSI+PM
Sbjct: 275 HHRTELNKKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSISPM 317
>SB_7140| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 58
Score = 91.9 bits (218), Expect = 5e-19
Identities = 40/43 (93%), Positives = 43/43 (100%)
Frame = +3
Query: 255 HHRTEMNKKIYRIGQGIHKKDGKVIKNNASTEYDLSEKSITPM 383
HHRTE+NKKIYRIGQGIHKKDGKVIKNNASTEYDL++KSITPM
Sbjct: 4 HHRTELNKKIYRIGQGIHKKDGKVIKNNASTEYDLTDKSITPM 46
>SB_14332| Best HMM Match : Ribosomal_L3 (HMM E-Value=8.6e-34)
Length = 347
Score = 74.9 bits (176), Expect = 6e-14
Identities = 31/47 (65%), Positives = 39/47 (82%)
Frame = +3
Query: 384 GGFPHYXEVNNDFVMIKGCCMGPKKRIITLRKSLRVHTKRAA*KRST 524
GGFPHY +VN DF+M+KGC +GPKKR++TLRKSL VHT R A ++ T
Sbjct: 215 GGFPHYGQVNEDFLMVKGCVVGPKKRVLTLRKSLLVHTSRDAAEKIT 261
Score = 67.7 bits (158), Expect = 9e-12
Identities = 31/39 (79%), Positives = 33/39 (84%)
Frame = +2
Query: 512 EKINLKFIDTSSKFGHGRFQTPADKAAFMGTLKKDRIRE 628
EKI LKFIDTSSKFGHGRFQ PA+K AFMG LK DR +E
Sbjct: 258 EKITLKFIDTSSKFGHGRFQHPAEKRAFMGMLKSDREKE 296
>SB_22251| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 497
Score = 30.7 bits (66), Expect = 1.2
Identities = 16/35 (45%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Frame = +1
Query: 292 LDKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 393
LDK MA + HLLS+T RNP LH++E++
Sbjct: 247 LDKRFQDEMAFNVSKCHLLSVTNKRNPSLHEYEIN 281
>SB_51282| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 217
Score = 29.9 bits (64), Expect = 2.1
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = +3
Query: 309 KKDGKVIKNNASTEYDLSEKSITPMGGFPHYXEVNNDFVMIK 434
KK V +N+ T D + + GFPHY + +D + IK
Sbjct: 44 KKCWTVTQNDVPTPLDCGLSAWRILSGFPHYKLIEDDHIEIK 85
>SB_57037| Best HMM Match : RVT_1 (HMM E-Value=3.4e-15)
Length = 291
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 295 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 393
D T +MA + HLLS+T RNP LH++E++
Sbjct: 173 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 206
>SB_56220| Best HMM Match : RVT_1 (HMM E-Value=3.7e-16)
Length = 453
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 295 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 393
D T +MA + HLLS+T RNP LH++E++
Sbjct: 204 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 237
>SB_37487| Best HMM Match : RVT_1 (HMM E-Value=0.03)
Length = 347
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 295 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 393
D T +MA + HLLS+T RNP LH++E++
Sbjct: 275 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 308
>SB_33284| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 263
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 295 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 393
D T +MA + HLLS+T RNP LH++E++
Sbjct: 59 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 92
>SB_30332| Best HMM Match : RVT_1 (HMM E-Value=2.7e-34)
Length = 1683
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 295 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 393
D T +MA + HLLS+T RNP LH++E++
Sbjct: 1091 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 1124
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 295 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 393
D T +MA + HLLS+T RNP LH++E++
Sbjct: 1283 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 1316
>SB_28979| Best HMM Match : RVT_1 (HMM E-Value=1.6e-40)
Length = 892
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 295 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 393
D T +MA + HLLS+T RNP LH++E++
Sbjct: 643 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 676
>SB_26992| Best HMM Match : rve (HMM E-Value=6.3e-36)
Length = 1022
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 295 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 393
D T +MA + HLLS+T RNP LH++E++
Sbjct: 832 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 865
>SB_51232| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1676
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 295 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 393
D T +MA + HLLS+T RNP LH++E++
Sbjct: 895 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 928
>SB_23276| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 193
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 295 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 393
D T +MA + HLLS+T RNP LH++E++
Sbjct: 75 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 108
>SB_11067| Best HMM Match : RVT_1 (HMM E-Value=0)
Length = 1176
Score = 28.7 bits (61), Expect = 4.9
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = +1
Query: 295 DKESTKRMAKLLKTMHLLSMTCLRNP-LHQWEVS 393
D T +MA + HLLS+T RNP LH++E++
Sbjct: 979 DWSDTWQMAFNVSKCHLLSVTNKRNPSLHEYEIN 1012
>SB_13763| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 319
Score = 27.9 bits (59), Expect = 8.6
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -1
Query: 255 VTFLTSTSYSERHPRRMPSSNAGNFPKTLVCLTG 154
++F +T Y +RH RR S N +F + L G
Sbjct: 100 ISFPNTTQYRDRHARRSRSQNGVSFLINIATLVG 133
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,394,571
Number of Sequences: 59808
Number of extensions: 504196
Number of successful extensions: 1038
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 990
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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