Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00044
(905 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 160 3e-40
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 91 3e-19
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 90 5e-19
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 76 8e-15
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 62 1e-10
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 57 4e-09
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 54 2e-08
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 52 1e-07
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 37 0.005
SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase Lkh1|Schi... 31 0.17
SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyc... 29 0.91
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 28 2.1
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb... 27 2.8
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 2.8
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation... 27 2.8
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 27 3.7
SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces... 27 4.8
SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 26 6.4
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 6.4
SPBC530.14c |dsk1||SR protein-specific kinase Dsk1|Schizosacchar... 26 6.4
SPAC1952.17c ||SPAC890.01c|GTPase activating protein|Schizosacch... 26 6.4
SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr 1|||M... 26 6.4
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos... 26 8.5
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 160 bits (388), Expect = 3e-40
Identities = 76/84 (90%), Positives = 80/84 (95%)
Frame = +2
Query: 257 IYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFX 436
IYEGYALPHAI+RLDLAGRDLTDYLMKIL ERGY+F+TTAEREIVRDIKEKLCYVALDF
Sbjct: 165 IYEGYALPHAIMRLDLAGRDLTDYLMKILMERGYTFSTTAEREIVRDIKEKLCYVALDFE 224
Query: 437 QEMATAASSSSLEKSYELPDGQVI 508
QE+ TAA SSSLEKSYELPDGQVI
Sbjct: 225 QELQTAAQSSSLEKSYELPDGQVI 248
Score = 127 bits (306), Expect = 2e-30
Identities = 59/65 (90%), Positives = 62/65 (95%)
Frame = +3
Query: 63 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 242
EHP LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGDGV
Sbjct: 100 EHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGDGV 159
Query: 243 SHTVP 257
+HTVP
Sbjct: 160 THTVP 164
Score = 126 bits (304), Expect = 4e-30
Identities = 67/123 (54%), Positives = 74/123 (60%), Gaps = 3/123 (2%)
Frame = +1
Query: 511 IGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYLES 690
IGNERFR PEALFQPS LG+E GIHE TYNSIMKCDVDIRKDLY N V+SGGTTMY
Sbjct: 250 IGNERFRAPEALFQPSALGLENAGIHEATYNSIMKCDVDIRKDLYGNVVMSGGTTMYPGI 309
Query: 691 PTVCKRKXXXXXXXXXXXXXXXXXEEVLRMDRWIDSRF---LSNFQQMWXSKQEFDEXXP 861
+++ E + WI LS FQQMW SKQE+DE P
Sbjct: 310 ADRMQKEIQALAPSSMKVKIVAPPER--KYSVWIGGSILASLSTFQQMWISKQEYDESGP 367
Query: 862 SIV 870
IV
Sbjct: 368 GIV 370
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 90.6 bits (215), Expect = 3e-19
Identities = 63/193 (32%), Positives = 94/193 (48%), Gaps = 4/193 (2%)
Frame = +2
Query: 257 IYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFX 436
IY+G+++P AI + ++ GRD+TDYL L + G+ ++AE+EIVR+IKEK CYVA DF
Sbjct: 170 IYDGFSIPSAIQQEEIGGRDVTDYLQLQLRKSGHELVSSAEKEIVREIKEKCCYVASDFR 229
Query: 437 QEMATAASSSSLEKSYELPDGQVILSETKDSVAQRLSSNPRSWVWKLAASTRPHITPS*S 616
E+ + +Y+LPD Q I T+ A + NP + ++ HI S
Sbjct: 230 SEIESWTEHKPQIHTYQLPDNQTITLGTECFSAPEVLFNPEMMG---SEASGLHIQLFKS 286
Query: 617 ATWTSXXXXXXXXXXXXXXXXXWNRRPYAKGNHSS-RPID---NED*DHCSSRRKYSVWI 784
+ R + + S R I N+ + S R ++ W+
Sbjct: 287 ILLSDIDLRSTLYSNIVLSGGSTLLRGFGERFISELRAISGKKNQVKIYASPERMHNAWL 346
Query: 785 GGSILASSLTFNR 823
GGSILAS TF R
Sbjct: 347 GGSILASLSTFRR 359
Score = 84.2 bits (199), Expect = 2e-17
Identities = 37/65 (56%), Positives = 50/65 (76%)
Frame = +3
Query: 63 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 242
EHP+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG+
Sbjct: 105 EHPLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGL 164
Query: 243 SHTVP 257
+H+VP
Sbjct: 165 THSVP 169
Score = 64.5 bits (150), Expect = 2e-11
Identities = 27/56 (48%), Positives = 37/56 (66%)
Frame = +1
Query: 511 IGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTM 678
+G E F PE LF P +G EA G+H + SI+ D+D+R LY+N VLSGG+T+
Sbjct: 255 LGTECFSAPEVLFNPEMMGSEASGLHIQLFKSILLSDIDLRSTLYSNIVLSGGSTL 310
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 89.8 bits (213), Expect = 5e-19
Identities = 41/66 (62%), Positives = 51/66 (77%)
Frame = +3
Query: 60 REHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDG 239
R +LLTE P+NP ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGDG
Sbjct: 99 RGRKILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDG 158
Query: 240 VSHTVP 257
V+H VP
Sbjct: 159 VTHIVP 164
Score = 87.0 bits (206), Expect = 3e-18
Identities = 39/84 (46%), Positives = 57/84 (67%)
Frame = +2
Query: 257 IYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFX 436
+YE L H + RLD+AGRD T YL+ +L +GY+F TA+ E VR++KEKLCYV+ D
Sbjct: 165 VYESVVLNHLVGRLDVAGRDATRYLISLLLRKGYAFNRTADFETVREMKEKLCYVSYDLE 224
Query: 437 QEMATAASSSSLEKSYELPDGQVI 508
+ + ++ L ++Y LPDG+VI
Sbjct: 225 LDHKLSEETTVLMRNYTLPDGRVI 248
Score = 70.1 bits (164), Expect = 4e-13
Identities = 31/62 (50%), Positives = 42/62 (67%)
Frame = +1
Query: 511 IGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYLES 690
+G+ER+ CPE LFQP +G E G+ E +++I DVDIRK LY VLSGG++MY
Sbjct: 250 VGSERYECPECLFQPHLVGSEQPGLSEFIFDTIQAADVDIRKYLYRAIVLSGGSSMYAGL 309
Query: 691 PT 696
P+
Sbjct: 310 PS 311
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 75.8 bits (178), Expect = 8e-15
Identities = 38/73 (52%), Positives = 49/73 (67%), Gaps = 8/73 (10%)
Frame = +3
Query: 63 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGI 218
+H LLTE PLNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG
Sbjct: 123 DHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGT 182
Query: 219 VLDSGDGVSHTVP 257
V+DSGDGV+H +P
Sbjct: 183 VVDSGDGVTHIIP 195
Score = 46.8 bits (106), Expect = 4e-06
Identities = 22/58 (37%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Frame = +1
Query: 511 IGNERFRCPEALFQPSFLGME-ACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 681
+G ERF PE F P + + E N + +D+RK LY N VLSGG+T++
Sbjct: 282 VGFERFLAPEIFFNPEIASSDFLTPLPELVDNVVQSSPIDVRKGLYKNIVLSGGSTLF 339
Score = 41.5 bits (93), Expect = 2e-04
Identities = 25/66 (37%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +2
Query: 257 IYEGYALPHAILRLDLAGRDLTDYLMKILTERGY--SFTTTAEREIVRDIKEKLCYVALD 430
+ EGY + +I + LAGRD+T ++ +L +R S TAER IKE+ CYV D
Sbjct: 196 VAEGYVIGSSIKTMPLAGRDVTYFVQSLLRDRNEPDSSLKTAER-----IKEECCYVCPD 250
Query: 431 FXQEMA 448
+E +
Sbjct: 251 IVKEFS 256
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 62.1 bits (144), Expect = 1e-10
Identities = 39/128 (30%), Positives = 53/128 (41%), Gaps = 12/128 (9%)
Frame = +1
Query: 505 HPIGNERFRCPEALFQPSFLGMEAC---------GIHETTYNSIMKCDVDIRKDLYANTV 657
H G ERFR E LF PSF + G+HE Y SI+ CD ++R L N V
Sbjct: 289 HKFGQERFRISEILFNPSFSASRSAETTPPQGSVGLHELVYQSILACDSELRSPLLNNIV 348
Query: 658 LSGGTTMYLESPTVCKRKXXXXXXXXXXXXXXXXXEEVLRMDRWIDSRFLS---NFQQMW 828
++GGT++ + + W L+ NFQ +W
Sbjct: 349 VTGGTSLIPGLSERLQAEVQRLATGSRINVHTAETASATSNAVWFGGSILASLDNFQHLW 408
Query: 829 XSKQEFDE 852
SKQE+DE
Sbjct: 409 VSKQEYDE 416
Score = 47.6 bits (108), Expect = 2e-06
Identities = 19/65 (29%), Positives = 39/65 (60%)
Frame = +3
Query: 63 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGV 242
E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D G
Sbjct: 101 EYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDIGSDN 160
Query: 243 SHTVP 257
+ P
Sbjct: 161 ASVTP 165
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 56.8 bits (131), Expect = 4e-09
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 2/67 (2%)
Frame = +3
Query: 63 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGD 236
EHP+ +TE NP R MT+++FE +N P++ I + S Y + + ++GIVL+ G+
Sbjct: 115 EHPICMTEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGN 174
Query: 237 GVSHTVP 257
SH +P
Sbjct: 175 AASHVIP 181
Score = 38.3 bits (85), Expect = 0.001
Identities = 15/50 (30%), Positives = 31/50 (62%)
Frame = +1
Query: 520 ERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGG 669
E+ R PE +F PS +G++ GI E + + + ++ ++ L +N +++GG
Sbjct: 594 EQIRVPEVIFSPSIVGIDQAGILEIMRSILQRHSLEEQQKLVSNVLITGG 643
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 54.4 bits (125), Expect = 2e-08
Identities = 25/57 (43%), Positives = 35/57 (61%)
Frame = +3
Query: 63 EHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSG 233
EHP+L+TE NP NR K + MFE+ PA Y+A Q + +ASG+ T ++D G
Sbjct: 98 EHPILITEPFDNPPENRVKTLETMFESLRCPATYLAKQETCAAFASGKGTACLVDIG 154
Score = 40.7 bits (91), Expect = 3e-04
Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 3/94 (3%)
Frame = +1
Query: 580 GIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYLESPTVCKRKXXXXXXXXXXXXXXXX 759
GI + N I +CDVDIR L N ++ GGT++ + +
Sbjct: 326 GIPQLFQNCISECDVDIRASLLNNVIVCGGTSLMQGFSLRLQNELSKLYPGSRLKIHASG 385
Query: 760 XEEVLRMDRWIDSRFLSN---FQQMWXSKQEFDE 852
W+ LS+ F Q+W S+QE++E
Sbjct: 386 HVVERSYASWLGGSILSSLGTFHQLWISRQEYEE 419
Score = 28.3 bits (60), Expect = 1.6
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +2
Query: 764 RKYSVWIGGSILASSLTFNR 823
R Y+ W+GGSIL+S TF++
Sbjct: 390 RSYASWLGGSILSSLGTFHQ 409
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 52.0 bits (119), Expect = 1e-07
Identities = 28/73 (38%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Frame = +2
Query: 284 AILRLDLAGRDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFXQEMATAASS 463
A+ R+D+ G+ LT+YL ++++ R Y+ E IV +IKE +CYV+ +F ++M
Sbjct: 182 AVKRVDVGGKLLTNYLKEVISYRKYNMME--ETYIVNEIKESVCYVSQNFKEDMEICHEK 239
Query: 464 --SSLEKSYELPD 496
S LE Y LPD
Sbjct: 240 PRSKLEICYALPD 252
Score = 39.1 bits (87), Expect = 8e-04
Identities = 20/57 (35%), Positives = 27/57 (47%)
Frame = +1
Query: 511 IGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMY 681
+ NERF PE LF PS + + GI E S+ +I+ L N V GG +
Sbjct: 276 LSNERFMIPELLFSPSDIEIREAGIPEAVMQSVTHFPENIQAMLLENVVTIGGNCKF 332
Score = 27.1 bits (57), Expect = 3.7
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +3
Query: 681 PGIADRMQKEITALAPSTMKIKIIAP 758
PG R+ E+ +LAP+ ++K+ P
Sbjct: 333 PGFHKRLSSELRSLAPANWEVKVFEP 358
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 36.7 bits (81), Expect = 0.005
Identities = 20/59 (33%), Positives = 28/59 (47%)
Frame = +3
Query: 57 TREHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSG 233
T +PV L +RE TQ FE P +A + ++ LYA G G+V+D G
Sbjct: 144 TFRYPVCLVIPTYWSLYDRELATQFFFEECQVPGFTIAYEPLMGLYAIGILHGLVIDIG 202
>SPAC1D4.11c |lkh1|kic1|dual specificity protein kinase
Lkh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 31.5 bits (68), Expect = 0.17
Identities = 26/68 (38%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = +1
Query: 142 HSTRPPCTSPSK-PCSRCTRPV-VPPV-SCWTPATV-SPTPCHLRRIRTPPRHPASGLSR 309
HS PP +P C RP VP V S W P ++ SP H + I PP P +
Sbjct: 135 HSHHPPLHNPLPVSCQPVLRPPPVPQVPSHWYPVSLPSPNLPH-QPISKPPVIPNLPKLQ 193
Query: 310 SRPHRLPH 333
P+RLPH
Sbjct: 194 VHPNRLPH 201
>SPAPB24D3.10c |agl1|agl|alpha-glucosidase Agl1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 969
Score = 29.1 bits (62), Expect = 0.91
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 9/124 (7%)
Frame = +2
Query: 203 SYHRYRAGLRRRCL---PHRAIYEGYALPHAILRLDLAGRDLTDYLMKILTERGYSF--- 364
SY+ Y AG+ + P+ +IY G P D D+ DY L Y+F
Sbjct: 411 SYYPYYAGVEKDIFLKNPNGSIYIGAVWPGFTAFPDFTNPDVVDYWKDCLINLTYAFGSN 470
Query: 365 TTTAEREIVRDIKE--KLCYVALDFXQ-EMATAASSSSLEKSYELPDGQVILSETKDSVA 535
T I D+ E C + ++ A + + K Y +P+G + + T+ S A
Sbjct: 471 GTVPFSGIWTDMNEPSSFCVGSCGSAMIDLNPAEPLTGISKQYSIPEGFNVSNVTEYSSA 530
Query: 536 QRLS 547
S
Sbjct: 531 YSAS 534
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 27.9 bits (59), Expect = 2.1
Identities = 17/58 (29%), Positives = 28/58 (48%)
Frame = +2
Query: 392 RDIKEKLCYVALDFXQEMATAASSSSLEKSYELPDGQVILSETKDSVAQRLSSNPRSW 565
R+I++K L QEM S S + + P + + +DS A++L+S SW
Sbjct: 429 REIRQK--EAKLKSEQEMEKQDLSLSWQDTMSNPQDRKFAQDVRDSAARQLTSETPSW 484
>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/56 (26%), Positives = 25/56 (44%)
Frame = +3
Query: 120 MTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPSTKDTHSPTP 287
+T +M P+M + ++ + G VL SGD V+ +P+ D H P
Sbjct: 1794 VTSLMLVNSKHPSMSALCRFIIYKSVTMLQNGEVLKSGDYVTEFIPALLDMHVHIP 1849
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = -3
Query: 291 RMAWGSAYPS*MARCGRHRRRSPARYRWYDR-TRTARAR 178
R +GS PS + H+ RSP R R DR +R++R+R
Sbjct: 123 RSDYGSRSPSPHSSVDSHQSRSPVRSRDRDRSSRSSRSR 161
>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
specificity factor complex subunit
Pta1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 670
Score = 27.5 bits (58), Expect = 2.8
Identities = 16/51 (31%), Positives = 30/51 (58%)
Frame = +2
Query: 389 VRDIKEKLCYVALDFXQEMATAASSSSLEKSYELPDGQVILSETKDSVAQR 541
+R I++ L + L + +T ASSSS+EK + GQ+ ++ +S+ +R
Sbjct: 258 IRCIEKNLKLILLHLAK--STGASSSSVEKIHAYLSGQIYHTKVDESLKKR 306
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 27.1 bits (57), Expect = 3.7
Identities = 22/85 (25%), Positives = 38/85 (44%)
Frame = +2
Query: 311 RDLTDYLMKILTERGYSFTTTAEREIVRDIKEKLCYVALDFXQEMATAASSSSLEKSYEL 490
RD + + L E +F E+EI+R+I CY+ F E + + +
Sbjct: 235 RDFPNEIRSYL-EASKNFNIFKEKEILRNICLDECYLKAYFSAEDVKVTTPFETLQQF-- 291
Query: 491 PDGQVILSETKDSVAQRLSSNPRSW 565
DG IL + K S ++S + +S+
Sbjct: 292 -DGDNILQQWKLSFFSKISHSEKSF 315
>SPBC1D7.02c |scr1||transcription factor Scr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 565
Score = 26.6 bits (56), Expect = 4.8
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = +1
Query: 199 PVVPPVSCWTPATVSPTPCHLRRIRTPPRHPASGLSR---SRPHR 324
P++PP+ C A + TP RTP S LS S PH+
Sbjct: 452 PLIPPLKCDPNAFSASTPASGAVSRTPSSVSLSSLSNVNSSMPHK 496
>SPBC1348.08c |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 416
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 776 RSTSSWRSNDLNLHCRWGESCDFLLHTVGDSRYMV 672
++ S W +N+ + + W ES + L TVG + V
Sbjct: 313 KAISGWSNNNFDAYSYWHESPNMGLGTVGMGNFTV 347
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +3
Query: 75 LLTEAPLNPKANREKMTQIMFETFN 149
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPBC530.14c |dsk1||SR protein-specific kinase
Dsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 26.2 bits (55), Expect = 6.4
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 770 TSSWRSNDLNLHCRWGESCD 711
T +RS ++ L CRWG S D
Sbjct: 377 TRQYRSPEVILGCRWGASAD 396
>SPAC1952.17c ||SPAC890.01c|GTPase activating
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 619
Score = 26.2 bits (55), Expect = 6.4
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -1
Query: 761 WRSNDLNLHCRWGESCDFLLHTVGDSRYMVVPPDNTVL 648
WR L LH GE+ D L+T DS++ DN +L
Sbjct: 81 WRK--LTLHEESGENSDHPLNTSDDSKWKEYFDDNQIL 116
>SPAC977.07c |||glycoprotein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 416
Score = 26.2 bits (55), Expect = 6.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = -1
Query: 776 RSTSSWRSNDLNLHCRWGESCDFLLHTVGDSRYMV 672
++ S W +N+ + + W ES + L TVG + V
Sbjct: 313 KAISGWSNNNFDAYSYWHESPNMGLGTVGMGNFTV 347
>SPBP35G2.05c |cki2||serine/threonine protein kinase
Cki2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 25.8 bits (54), Expect = 8.5
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = -2
Query: 337 LHEVVCEVATG*VQTQDGVGECVSFVDGTVWETPSPESSTIPVVRPDAY 191
L E+ +V T DGV + + DG WE+ S S + + R Y
Sbjct: 274 LQELFDDVLRANGDTNDGVYDWMLLNDGKGWESSSSHFSVVAMKRRKNY 322
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,896,093
Number of Sequences: 5004
Number of extensions: 85068
Number of successful extensions: 360
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 305
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 350
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 458501510
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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