Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00044
         (905 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.             130   2e-32
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    27   0.23 
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    27   0.23 
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    24   1.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    23   3.8  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     23   3.8  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.7  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   6.7  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   8.8  

>AB023025-1|BAA74592.1|  133|Apis mellifera actin protein.
          Length = 133

 Score =  130 bits (314), Expect = 2e-32
 Identities = 68/111 (61%), Positives = 73/111 (65%), Gaps = 3/111 (2%)
 Frame = +1

Query: 511 IGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYLES 690
           IGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMY   
Sbjct: 25  IGNERFRCPEALFQPSFLGMEACGIHETTYNSIMKCDVDIRKDLYANTVLSGGTTMYPGI 84

Query: 691 PTVCKRKXXXXXXXXXXXXXXXXXEEVLRMDRWIDSRF---LSNFQQMWXS 834
               +++                 E+  +   WI       LS FQQMW S
Sbjct: 85  ADRMQKEITALAPSTMKIKIIAPPEK--KYSVWIGGSILASLSTFQQMWIS 133



 Score = 48.0 bits (109), Expect = 1e-07
 Identities = 23/23 (100%), Positives = 23/23 (100%)
 Frame = +2

Query: 440 EMATAASSSSLEKSYELPDGQVI 508
           EMATAASSSSLEKSYELPDGQVI
Sbjct: 1   EMATAASSSSLEKSYELPDGQVI 23


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 23  N*WIPRAAGIRHEGTPSPAH*GSPQ 97
           N W+P+   +RH+G  SP   G P+
Sbjct: 130 NIWVPQKYRLRHKGDGSPGGNGGPR 154


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 27.1 bits (57), Expect = 0.23
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 23  N*WIPRAAGIRHEGTPSPAH*GSPQ 97
           N W+P+   +RH+G  SP   G P+
Sbjct: 130 NIWVPQKYRLRHKGDGSPGGNGGPR 154


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -1

Query: 68  VFPRAEFLQPGGSTSSR 18
           ++ + EFL PGGS   R
Sbjct: 64  IYAKCEFLNPGGSVKDR 80


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 819 LKVREEARIDP 787
           LK+REE R+DP
Sbjct: 157 LKIREEIRVDP 167


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = -3

Query: 819 LKVREEARIDP 787
           LK+REE R+DP
Sbjct: 157 LKIREEIRVDP 167


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 9/15 (60%), Positives = 12/15 (80%)
 Frame = -1

Query: 803  KRESIHRSIRSTSSW 759
            KR ++ RSIRS S+W
Sbjct: 1668 KRGTVIRSIRSHSTW 1682


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 6.7
 Identities = 12/34 (35%), Positives = 12/34 (35%), Gaps = 1/34 (2%)
 Frame = +1

Query: 274 TP-PRHPASGLSRSRPHRLPHEDPHRARLLVHYH 372
           TP P H   G   S  H  PH     A    H H
Sbjct: 411 TPGPHHHTMGHGHSHIHATPHHHHSHAATPHHQH 444


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.8 bits (44), Expect = 8.8
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +3

Query: 720 LAPSTMKIKIIAPPG 764
           L P T+K KI  PPG
Sbjct: 454 LCPYTLKHKIRVPPG 468


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 273,474
Number of Sequences: 438
Number of extensions: 6481
Number of successful extensions: 19
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29388177
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)