Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00042
         (605 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.05 |med20||mediator complex subunit Med20|Schizosacchar...    27   1.6  
SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr 2|...    25   8.6  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    25   8.6  

>SPAC17G8.05 |med20||mediator complex subunit
           Med20|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 180

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 12/39 (30%), Positives = 24/39 (61%)
 Frame = -3

Query: 288 FFYWCYENDNVL*TKSPKSYFNKKKNTVDRQWFL*IFEQ 172
           FF  C+  +N   T   +S+FN+ ++++D +  L +F+Q
Sbjct: 133 FFLKCFLQNNKSVTPVYESFFNQPRHSLDSKLLLQLFKQ 171


>SPBC582.03 |cdc13||cyclin Cdc13|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 482

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 18/55 (32%), Positives = 27/55 (49%)
 Frame = -3

Query: 486 NYVILTFSGAIIEECAYYIVYILIRYFRSLLAILSQINFIRRLFIIELCELFTRT 322
           N+V +   G   EE      YIL R     LA  + +NF+RR+   +  ++ TRT
Sbjct: 302 NFVYMADGGYDEEEILQAERYIL-RVLEFNLAYPNPMNFLRRISKADFYDIQTRT 355


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 3655

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 302 LVDFVRNVLVNNSHNSIMKSLRIKLI 379
           L+DF+RN  VN   NS +  L+I+ +
Sbjct: 55  LLDFLRNTEVNLYRNSSVNELKIEAL 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,581,129
Number of Sequences: 5004
Number of extensions: 55875
Number of successful extensions: 156
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)