Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00042
         (605 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42855| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_30925| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.9  
SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.1  
SB_51803| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-30)           28   6.7  
SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10)                  28   6.7  
SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.9  
SB_38111| Best HMM Match : Kelch_1 (HMM E-Value=0)                     27   8.9  
SB_33742| Best HMM Match : Kelch_1 (HMM E-Value=0)                     27   8.9  

>SB_42855| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 809

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 9/26 (34%), Positives = 20/26 (76%)
 Frame = -2

Query: 100 KDSILADNIDIKRKIKVHIDASKANV 23
           KDS+L  +++++R++K H+D S + +
Sbjct: 337 KDSLLEQSLEVERRLKYHLDESDSTI 362


>SB_30925| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 209

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 179 SNKCD*IQPLTIKRDKYLVYKYERNF 102
           SN CD  +P T +R++   Y+YER F
Sbjct: 157 SNGCDPNRPSTCRRERKRNYRYEREF 182


>SB_49186| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1776

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/61 (29%), Positives = 26/61 (42%)
 Frame = -3

Query: 501 ICTKNNYVILTFSGAIIEECAYYIVYILIRYFRSLLAILSQINFIRRLFIIELCELFTRT 322
           +C    YV+       +  C     ++ IR F       ++ N I  LF    CELFTR+
Sbjct: 210 LCLLLLYVVFDLCRYCVILCNQICDFLNIRVFSIKPLERAEGNSICELFTRSFCELFTRS 269

Query: 321 F 319
           F
Sbjct: 270 F 270


>SB_51803| Best HMM Match : Ion_trans_2 (HMM E-Value=2.3e-30)
          Length = 823

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 363 RLFIIELCELFTRTFRTKSTKN*AAFFYWCY 271
           R F+ E+CE+F RT + K + N  +++   Y
Sbjct: 256 RAFVQEMCEIFERTHKCKYSHNDWSYYQSLY 286


>SB_11216| Best HMM Match : GILT (HMM E-Value=6.7e-10)
          Length = 311

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
 Frame = -3

Query: 558 FNL*C*NGTKRCYQH--QKCKICTKNNYVILT-FSGAI 454
           F   C NG + C ++  Q C + T+NN  ILT F G +
Sbjct: 79  FQYYCTNGAEECLENLIQACAVATENNPEILTSFVGCL 116


>SB_49296| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 966

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 557 LTYDVKTVQNGVTNTKNVKSVRKII 483
           + +DVK  +NGV N KN+  + K++
Sbjct: 382 IQFDVKFPENGVLNPKNMDKLEKLL 406


>SB_38111| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 548

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 475 YYIIIFRTDFTFLVLVTPFCTVLTS*VKEYNKQPQNKH 588
           YY+  F  +   LVL TP CT L    K Y+  P  +H
Sbjct: 248 YYLADF-VETKELVLKTPECTPLLLEAKNYHMLPDRRH 284


>SB_33742| Best HMM Match : Kelch_1 (HMM E-Value=0)
          Length = 570

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 15/38 (39%), Positives = 19/38 (50%)
 Frame = +1

Query: 475 YYIIIFRTDFTFLVLVTPFCTVLTS*VKEYNKQPQNKH 588
           YY+  F  +   LVL TP CT L    K Y+  P  +H
Sbjct: 248 YYLADF-VETKELVLKTPECTPLLLEAKNYHMLPDRRH 284


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,743,544
Number of Sequences: 59808
Number of extensions: 362890
Number of successful extensions: 792
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)