Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00042
         (605 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49154-1|CAA89024.1|  570|Homo sapiens cL1C2.1 (exons 30-41) pro...    30   7.3  
L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease prot...    30   7.3  
AK127029-1|BAC86795.1|  212|Homo sapiens protein ( Homo sapiens ...    30   7.3  
AB209506-1|BAD92743.1| 1147|Homo sapiens huntingtin variant prot...    30   7.3  
AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein.           30   7.3  

>Z49154-1|CAA89024.1|  570|Homo sapiens cL1C2.1 (exons 30-41)
           protein.
          Length = 570

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 117 LIYQIFISFNRERLDSVTLVRIFKETIVCLLCFFFC*NMILE--ILSTKHCHFHNTNKKK 290
           +++ +F+     + D+   +   KE +V +L      + +LE  IL  + CH  N +K K
Sbjct: 257 IVHDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWK 316

Query: 291 RLN 299
           RL+
Sbjct: 317 RLS 319


>L12392-1|AAB38240.1| 3144|Homo sapiens Huntington's Disease protein
            protein.
          Length = 3144

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 117  LIYQIFISFNRERLDSVTLVRIFKETIVCLLCFFFC*NMILE--ILSTKHCHFHNTNKKK 290
            +++ +F+     + D+   +   KE +V +L      + +LE  IL  + CH  N +K K
Sbjct: 1547 IVHDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWK 1606

Query: 291  RLN 299
            RL+
Sbjct: 1607 RLS 1609


>AK127029-1|BAC86795.1|  212|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45085 fis, clone BRAWH3028754. ).
          Length = 212

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = +3

Query: 3   KVHCRLVTFAFEASIWTFIFLFISMLSASIESFKISFVLIYQIFISF 143
           KVHC L+ +    SI   I++F S+L   +E   I    I   FI F
Sbjct: 145 KVHCLLILYVNTVSI--EIYVFCSLLQLWLEKLSIFLTFIIPAFIVF 189


>AB209506-1|BAD92743.1| 1147|Homo sapiens huntingtin variant protein.
          Length = 1147

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 117  LIYQIFISFNRERLDSVTLVRIFKETIVCLLCFFFC*NMILE--ILSTKHCHFHNTNKKK 290
            +++ +F+     + D+   +   KE +V +L      + +LE  IL  + CH  N +K K
Sbjct: 943  IVHDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWK 1002

Query: 291  RLN 299
            RL+
Sbjct: 1003 RLS 1005


>AB016794-1|BAA36753.1| 3144|Homo sapiens huntingtin protein.
          Length = 3144

 Score = 29.9 bits (64), Expect = 7.3
 Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +3

Query: 117  LIYQIFISFNRERLDSVTLVRIFKETIVCLLCFFFC*NMILE--ILSTKHCHFHNTNKKK 290
            +++ +F+     + D+   +   KE +V +L      + +LE  IL  + CH  N +K K
Sbjct: 1547 IVHDLFVLRGTNKADAGKELETQKEVVVSMLLRLIQYHQVLEMFILVLQQCHKENEDKWK 1606

Query: 291  RLN 299
            RL+
Sbjct: 1607 RLS 1609


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 80,610,145
Number of Sequences: 237096
Number of extensions: 1600376
Number of successful extensions: 3186
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3106
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3183
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6410414940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)