Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00042
         (605 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z83120-8|CAE46678.2|  511|Caenorhabditis elegans Hypothetical pr...    30   1.1  
Z83120-7|CAB51466.2|  514|Caenorhabditis elegans Hypothetical pr...    30   1.1  
AY523516-1|AAR98638.1|  459|Caenorhabditis elegans acetylcholine...    30   1.1  
AY523515-1|AAR98637.1|  553|Caenorhabditis elegans acetylcholine...    30   1.1  
Z81050-10|CAB02860.1|  329|Caenorhabditis elegans Hypothetical p...    29   2.6  
AF016415-2|AAW88413.1|  296|Caenorhabditis elegans Serpentine re...    29   3.4  
AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin syntha...    28   4.5  
AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin syntha...    28   4.5  
AC024882-4|AAF60933.2|  338|Caenorhabditis elegans Seven tm rece...    28   4.5  
AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z78417-4|CAB01685.2|  531|Caenorhabditis elegans Hypothetical pr...    27   7.9  
L14331-8|AAA28100.1|  586|Caenorhabditis elegans C.elegans homeo...    27   7.9  

>Z83120-8|CAE46678.2|  511|Caenorhabditis elegans Hypothetical
           protein R06A4.10b protein.
          Length = 511

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -3

Query: 519 QHQKCKICTKNNYVILTFSGAIIEECAYYIVYILIRYFRSLLAILSQINF 370
           +H+    C  NNY +L F   I  +  YYI+ ++I    S++  +S I F
Sbjct: 171 RHENKYDCCPNNYTLLEFRLTIQRKPLYYIINLIIP--TSIITFISIIGF 218


>Z83120-7|CAB51466.2|  514|Caenorhabditis elegans Hypothetical
           protein R06A4.10a protein.
          Length = 514

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -3

Query: 519 QHQKCKICTKNNYVILTFSGAIIEECAYYIVYILIRYFRSLLAILSQINF 370
           +H+    C  NNY +L F   I  +  YYI+ ++I    S++  +S I F
Sbjct: 171 RHENKYDCCPNNYTLLEFRLTIQRKPLYYIINLIIP--TSIITFISIIGF 218


>AY523516-1|AAR98638.1|  459|Caenorhabditis elegans acetylcholine
           receptor alternativevariant b protein.
          Length = 459

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -3

Query: 519 QHQKCKICTKNNYVILTFSGAIIEECAYYIVYILIRYFRSLLAILSQINF 370
           +H+    C  NNY +L F   I  +  YYI+ ++I    S++  +S I F
Sbjct: 116 RHENKYDCCPNNYTLLEFRLTIQRKPLYYIINLIIP--TSIITFISIIGF 163


>AY523515-1|AAR98637.1|  553|Caenorhabditis elegans acetylcholine
           receptor 20 (63.9kD) alternative variant a protein.
          Length = 553

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -3

Query: 519 QHQKCKICTKNNYVILTFSGAIIEECAYYIVYILIRYFRSLLAILSQINF 370
           +H+    C  NNY +L F   I  +  YYI+ ++I    S++  +S I F
Sbjct: 213 RHENKYDCCPNNYTLLEFRLTIQRKPLYYIINLIIP--TSIITFISIIGF 260


>Z81050-10|CAB02860.1|  329|Caenorhabditis elegans Hypothetical
           protein C50B6.12 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
 Frame = +3

Query: 60  FLFISMLSASIESFKISF-VLIYQIFISFNRERLDSVTLVRIFKETIVCLLCFFFC*NMI 236
           F  + +LS  I + ++SF   IY   ISF    LDS+ ++ I  E  VC+   F C N +
Sbjct: 259 FPMMILLSTPILNLEVSFNSSIYHWGISFYPS-LDSIAVMLIVSEYKVCIRKIFKCSNTV 317


>AF016415-2|AAW88413.1|  296|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 29 protein.
          Length = 296

 Score = 28.7 bits (61), Expect = 3.4
 Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = -1

Query: 389 YYHKSILSVDF--SLLSYVSCLQEHSERNLPKIEPLFFI 279
           +Y++ +L V F  SLLSY+S L  +SE +L  +E   F+
Sbjct: 44  FYYRFVLDVCFGLSLLSYISFLLFYSENSLFMVEHRSFL 82


>AY874872-1|AAX62733.1| 1668|Caenorhabditis elegans chitin synthase 2
            protein.
          Length = 1668

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +3

Query: 42   SIWTFIFLFISMLSASIESFKISFVLIYQIFISFNRERLDSVTLVRI 182
            SIW  I+  + ++S+ +    I  ++I  I ISF+ + L S+ +V I
Sbjct: 1037 SIWYIIYQLVMLISSILGPGTIFVMIIGAISISFSIDTLISLVIVSI 1083


>AF026210-2|AAB71283.2| 1668|Caenorhabditis elegans Chitin synthase
            protein 2 protein.
          Length = 1668

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 15/47 (31%), Positives = 27/47 (57%)
 Frame = +3

Query: 42   SIWTFIFLFISMLSASIESFKISFVLIYQIFISFNRERLDSVTLVRI 182
            SIW  I+  + ++S+ +    I  ++I  I ISF+ + L S+ +V I
Sbjct: 1037 SIWYIIYQLVMLISSILGPGTIFVMIIGAISISFSIDTLISLVIVSI 1083


>AC024882-4|AAF60933.2|  338|Caenorhabditis elegans Seven tm
           receptor protein 158 protein.
          Length = 338

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 20/58 (34%), Positives = 31/58 (53%)
 Frame = +3

Query: 75  MLSASIESFKISFVLIYQIFISFNRERLDSVTLVRIFKETIVCLLCFFFC*NMILEIL 248
           +L + I+SF I  +LI  I I F   +  S T +  +K     LLC+F C +M+  +L
Sbjct: 6   LLKSFIQSFAIFVLLITNILIIF-LVKTKSPTKMGSYKH----LLCYFSCLSMVYGVL 58


>AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical
           protein Y57A10C.3 protein.
          Length = 364

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -2

Query: 604 YLNNFNVCSVAVYCIL*LMMLKRYKTVLPT 515
           +LN F +C+VA+Y I      KRYK   P+
Sbjct: 293 FLNPFGICTVAMYSI--PAWKKRYKNAFPS 320


>Z78417-4|CAB01685.2|  531|Caenorhabditis elegans Hypothetical
           protein C35C5.5 protein.
          Length = 531

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = -2

Query: 121 ISTKEILKDSILADNIDIKRKIKVHIDASKANVTKRQ 11
           +   E LK    ADN+D+ RKI  H+    A+   +Q
Sbjct: 427 VQMDEALKQRCAADNLDLFRKIAGHLKIISAHFHNQQ 463


>L14331-8|AAA28100.1|  586|Caenorhabditis elegans C.elegans homeobox
           protein 26 protein.
          Length = 586

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 288 FFYWCYENDNVL*TKSPKSYFNKKKNTVDRQWF 190
           FFY  Y N N+L +  P   FNK       +WF
Sbjct: 442 FFYTRYPNSNLLKSYFPDIRFNKNNTAQLVKWF 474


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,947,282
Number of Sequences: 27780
Number of extensions: 304132
Number of successful extensions: 989
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 928
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 988
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1300523034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)