Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00042
         (605 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein pr...    24   1.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    23   2.3  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   4.1  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    22   5.4  
DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    21   7.1  
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    21   7.1  
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    21   7.1  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   9.4  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.4  
AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding prote...    21   9.4  
AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding prote...    21   9.4  

>DQ011227-1|AAY63896.1|  484|Apis mellifera Amt-1-like protein
           protein.
          Length = 484

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 422 SLYGILGRYWQYYHKSILS 366
           S YG+ G+ WQY  ++ +S
Sbjct: 242 STYGVSGQRWQYAARAAIS 260


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +3

Query: 138 SFNRERLDSVTLVRIFKETIVCLLCFFFC*NMILEILSTK 257
           S  +ER  + TL  +    ++C L FF C   I++ + TK
Sbjct: 610 SAKKERKATKTLAIVLGVFLICWLPFFTC--NIMDAICTK 647


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = -2

Query: 139 EINIWYISTKEILKDSILADNIDIKRKIKVHIDASKANVTKRQ 11
           ++  WY+  K +L + ILA+ + +K   K  ++     V+  Q
Sbjct: 670 QVTNWYMGWKGMLSEKILAEPL-VKEHFKKALELMNRAVSVPQ 711


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +3

Query: 147 RERLDSVTLVRIFKETIVCLLCFF 218
           +ER  S TL  I    IVC L FF
Sbjct: 366 KERKASTTLGIIMSAFIVCWLPFF 389


>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 135 ISFNRERLDSVTLVRIFKETIVCLLCFF 218
           IS ++ER  + TL  I    +VC L FF
Sbjct: 317 ISLSKERRAARTLGVIMGVFVVCWLPFF 344


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 135 ISFNRERLDSVTLVRIFKETIVCLLCFF 218
           IS ++ER  + TL  I    +VC L FF
Sbjct: 317 ISLSKERRAARTLGVIMGVFVVCWLPFF 344


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +3

Query: 135 ISFNRERLDSVTLVRIFKETIVCLLCFF 218
           IS ++ER  + TL  I    +VC L FF
Sbjct: 317 ISLSKERRAARTLGVIMGVFVVCWLPFF 344


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = +2

Query: 344 NSIMKSLRIKLICDNIANNDLKYRIRIY 427
           N ++    I  +C +I +    YR+++Y
Sbjct: 16  NVLLHGQVICFVCKDITSTSALYRLKLY 43


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 308 DFVRNVLVNNSHNSIMK 358
           DF   +++NN +N+ MK
Sbjct: 482 DFSYTIVINNRNNTSMK 498


>AF393495-1|AAL60420.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 186 KETIVCLLCFFFC 224
           K TIV LLC  +C
Sbjct: 2   KITIVSLLCVIYC 14


>AF393492-1|AAL60417.1|  136|Apis mellifera odorant binding protein
           ASP4 protein.
          Length = 136

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +3

Query: 186 KETIVCLLCFFFC 224
           K TIV LLC  +C
Sbjct: 2   KITIVSLLCVIYC 14


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,335
Number of Sequences: 438
Number of extensions: 4162
Number of successful extensions: 12
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17848938
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)