Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00041
(599 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g38160.1 68415.m04684 expressed protein 31 0.58
At4g07825.1 68417.m01238 expressed protein this may be a pseudog... 31 0.77
At2g36110.1 68415.m04434 3'-5' exonuclease domain-containing pro... 30 1.0
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 30 1.3
At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated... 29 1.8
At3g44260.1 68416.m04750 CCR4-NOT transcription complex protein,... 29 2.4
At2g35210.2 68415.m04318 human Rev interacting-like family prote... 29 3.1
At2g35210.1 68415.m04319 human Rev interacting-like family prote... 29 3.1
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 29 3.1
At1g02730.1 68414.m00226 cellulose synthase family protein simil... 29 3.1
At4g18670.1 68417.m02762 leucine-rich repeat family protein / ex... 28 4.1
At5g53440.1 68418.m06641 expressed protein 28 5.4
At3g08550.1 68416.m00992 elongation defective 1 protein / ELD1 p... 28 5.4
At2g21235.1 68415.m02522 bZIP protein-related similar to VirE2-i... 28 5.4
At1g64400.1 68414.m07299 long-chain-fatty-acid--CoA ligase, puta... 28 5.4
At1g03910.1 68414.m00376 expressed protein low similarity to cac... 28 5.4
At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identic... 27 7.2
At4g24790.1 68417.m03550 expressed protein ; expression supporte... 27 7.2
At4g19600.1 68417.m02880 cyclin family protein similar to cyclin... 27 7.2
At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99... 27 7.2
At2g43610.1 68415.m05421 glycoside hydrolase family 19 protein s... 27 7.2
At5g13350.1 68418.m01538 auxin-responsive GH3 family protein sim... 27 9.5
At5g03140.1 68418.m00262 lectin protein kinase family protein co... 27 9.5
At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family... 27 9.5
>At2g38160.1 68415.m04684 expressed protein
Length = 299
Score = 31.1 bits (67), Expect = 0.58
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = -2
Query: 199 LPSASTSSFSQGSRRPGPCSSNRPPATASMSLRSASPGDRAAPADCTTPAVSSSIAYELS 20
LPS ++ +Q S +S + AS RS+S G + A CTTP + + A +S
Sbjct: 157 LPSTRLTNSAQKSNSESITTSIKSNTRASAFPRSSSVGKSVSSAKCTTPKIPETRARPVS 216
>At4g07825.1 68417.m01238 expressed protein this may be a
pseudogene. A long ORF is frameshifted.
Length = 247
Score = 30.7 bits (66), Expect = 0.77
Identities = 24/64 (37%), Positives = 32/64 (50%), Gaps = 6/64 (9%)
Frame = -2
Query: 259 NLLKXCCAXAVRSSRFCGG---MLPSASTSSFS-QG-SRRPGPCSSNRPPAT-ASMSLRS 98
NL K CC+ CGG + P+ +T FS G S P S +RP +T S+S
Sbjct: 184 NLTKPCCSFIASYPYTCGGINNISPTEATLGFSLLGLSNCCSPSSLSRPTSTNLSLSHNH 243
Query: 97 ASPG 86
+SPG
Sbjct: 244 SSPG 247
>At2g36110.1 68415.m04434 3'-5' exonuclease domain-containing
protein contains Pfam profile PF01612: 3'-5' exonuclease
Length = 239
Score = 30.3 bits (65), Expect = 1.0
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Frame = +1
Query: 397 NSEDRGKIRLFRHQQKV---IDIEKTRPTR 477
NS+D+GK+ FRHQ ++ +DI PTR
Sbjct: 115 NSQDQGKLERFRHQLEIWRLLDIRHYLPTR 144
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 29.9 bits (64), Expect = 1.3
Identities = 19/68 (27%), Positives = 25/68 (36%), Gaps = 1/68 (1%)
Frame = -2
Query: 205 GMLPSASTSSFSQGSR-RPGPCSSNRPPATASMSLRSASPGDRAAPADCTTPAVSSSIAY 29
G +PS + +P P PP A + PG R AP+ A+S A
Sbjct: 398 GYMPSPYQQQYPPNHHHQPSPMQHYAPPPAAYPYPQQPGPGSRPAPSPTAVSAISPDSAP 457
Query: 28 ELSGVQFG 5
SG G
Sbjct: 458 AGSGAPSG 465
>At4g33930.1 68417.m04815 glycine-rich protein hyphally regulated
protein, Candida albicans, PIR2:S58135
Length = 343
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/69 (21%), Positives = 32/69 (46%)
Frame = +2
Query: 308 ANTQRAPGSSRATRRSNTDNEHDAPNGEGKIVKTEEKSDCSDTNKK*SILRRHDPHASNN 487
+N + GS+ ++ +T N H + + I+ + K+ S +N + H+ H+S +
Sbjct: 143 SNHSSSTGSNHSSSTGSTHNNHSSGSNHSSILGSTHKNHSSGSNHSSIVGSTHNNHSSGS 202
Query: 488 PYV*IATGT 514
+ I T
Sbjct: 203 NHSSITGST 211
>At3g44260.1 68416.m04750 CCR4-NOT transcription complex protein,
putative similar to SWISS-PROT:Q9UFF9 CCR4-NOT
transcription complex, subunit 8 (CAF1-like protein,
CALIFp) [Homo sapiens]
Length = 280
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = -2
Query: 349 PGCAGTSRRPLRVRLGERLH-VEHLMNLPESNL 254
PG G +R +RV GER++ V+H+M E L
Sbjct: 188 PGALGEFKRVMRVLFGERVYDVKHMMKFCERRL 220
>At2g35210.2 68415.m04318 human Rev interacting-like family protein
/ hRIP family protein similar to ARFGAP1 protein
GI:7211442 from [Homo sapiens]; contains InterPro
accession IPR001164: Human Rev interacting-like protein
(hRIP)
Length = 371
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +2
Query: 194 GQHAAAETGRSDGLSATVL-KKIAFRQIHKVLDMEPLPKANTQRAPG-----SSRATRRS 355
G+ A T R+ L +L K++A + + LD+ P P +TQ G +S A + S
Sbjct: 99 GKTEAKYTSRAADLYKQILAKEVAKSKAEEELDLPPSPPDSTQVPNGLSSIKTSEALKES 158
Query: 356 NTDNEHDAPN 385
NT + + P+
Sbjct: 159 NTLKQQEKPD 168
>At2g35210.1 68415.m04319 human Rev interacting-like family protein
/ hRIP family protein similar to ARFGAP1 protein
GI:7211442 from [Homo sapiens]; contains InterPro
accession IPR001164: Human Rev interacting-like protein
(hRIP)
Length = 395
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/70 (30%), Positives = 35/70 (50%), Gaps = 6/70 (8%)
Frame = +2
Query: 194 GQHAAAETGRSDGLSATVL-KKIAFRQIHKVLDMEPLPKANTQRAPG-----SSRATRRS 355
G+ A T R+ L +L K++A + + LD+ P P +TQ G +S A + S
Sbjct: 99 GKTEAKYTSRAADLYKQILAKEVAKSKAEEELDLPPSPPDSTQVPNGLSSIKTSEALKES 158
Query: 356 NTDNEHDAPN 385
NT + + P+
Sbjct: 159 NTLKQQEKPD 168
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 28.7 bits (61), Expect = 3.1
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -2
Query: 202 MLPSASTSSFSQGSRRPGPCSSNRPPATASMSLRSASPGDRAA-PADCTTPAVSSS 38
+L SA SSFS ++ GP +S T + +A+P AA P TTP VS++
Sbjct: 11 LLASALISSFSVNAQ--GPAASPVTSTTTAPPPTTAAPPTTAAPPPTTTTPPVSAA 64
>At1g02730.1 68414.m00226 cellulose synthase family protein similar
to cellulose synthase catalytic subunit [gi:13925881]
from Nicotiana alata, cellulose synthase-4 [gi:9622880]
from Zea mays
Length = 1181
Score = 28.7 bits (61), Expect = 3.1
Identities = 18/58 (31%), Positives = 31/58 (53%), Gaps = 4/58 (6%)
Frame = +2
Query: 296 PLPKANT---QRAPGSSRATRRSNTDNEHDAPNG-EGKIVKTEEKSDCSDTNKK*SIL 457
P+P+A+ Q +P SSRATRR++ + + NG EG+ + ++T +L
Sbjct: 33 PIPRASVITNQNSPLSSRATRRTSISSGNRRSNGDEGRYCSMSVEDLTAETTNSECVL 90
>At4g18670.1 68417.m02762 leucine-rich repeat family protein /
extensin family protein similar to extensin-like protein
[Lycopersicon esculentum] gi|5917664|gb|AAD55979;
contains leucine-rich repeats, Pfam:PF00560; contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 839
Score = 28.3 bits (60), Expect = 4.1
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = -2
Query: 208 GGMLPSASTSSFSQGSRRPGPCSSNRPPATA-SMSLRSASPGDRAAPADCT 59
GG PS+ T+ S G P P S PP T S SPG +P+ T
Sbjct: 504 GGSPPSSPTTP-SPGGSPPSPSISPSPPITVPSPPSTPTSPGSPPSPSSPT 553
>At5g53440.1 68418.m06641 expressed protein
Length = 1181
Score = 27.9 bits (59), Expect = 5.4
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = +2
Query: 287 DMEPLPKANTQRAPG--SSRATRRSNTDNEHDAPNGEGKIVKTEEK-SDCSDTN 439
+++ LP AP S + N D+ +DA NG I T+ K +D SD++
Sbjct: 939 EIKGLPNVKNHEAPQVPPSNLVKVENNDDLNDARNGNSSIEATDMKIADVSDSD 992
>At3g08550.1 68416.m00992 elongation defective 1 protein / ELD1
protein annotation temporarily based on supporting cDNA
gi|23452833|gb|AF543710.1|
Length = 533
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/60 (26%), Positives = 27/60 (45%)
Frame = -2
Query: 208 GGMLPSASTSSFSQGSRRPGPCSSNRPPATASMSLRSASPGDRAAPADCTTPAVSSSIAY 29
GG L +++S + PG N ++ S SP + +DC+ A SSS ++
Sbjct: 53 GGGLADPASASVRSSTSVPGGSDLNHEVFPGMETVSSVSPKSHQSSSDCSNLARSSSPSF 112
>At2g21235.1 68415.m02522 bZIP protein-related similar to
VirE2-interacting protein VIP1 [Arabidopsis thaliana]
GI:7258340, tbZIP transcription factor [Arabidopsis
thaliana] GI:17065884
Length = 550
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Frame = -2
Query: 196 PSASTSSFSQGSRR---PGPCSSNRPPATASMSLRSASPGDRAAPADCTTPAVSSSIAYE 26
P++ T SFS + P P SS+ A+ S + S+ + +P+ C+TP+ S ++
Sbjct: 78 PASFTPSFSFSNIHQMIPTPSSSHNSKASVSSASSSSFYFPQTSPSSCSTPSSFSPDSFS 137
Query: 25 LS 20
S
Sbjct: 138 HS 139
>At1g64400.1 68414.m07299 long-chain-fatty-acid--CoA ligase,
putative / long-chain acyl-CoA synthetase, putative
similar to GI:1617270 (MF7P) from [Brassica napus]
Length = 665
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/25 (48%), Positives = 13/25 (52%)
Frame = -1
Query: 167 GVPQAGPVFEQQAAGDGLHEPPQRL 93
G P GPV+ A DG EPP L
Sbjct: 20 GSPSVGPVYRSIYAKDGFPEPPDDL 44
>At1g03910.1 68414.m00376 expressed protein low similarity to cactin
[Drosophila melanogaster] GI:7673675; expression
supported by MPSS
Length = 672
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +2
Query: 287 DMEPLPKANTQRAPGSSRATRRSNTDNEHDAPNGEGKIVKTEEKSDCSD 433
D+ P P+++ ++ SSR TRR ++ ++ +G K K D S+
Sbjct: 40 DLSP-PRSSRRKKGSSSRRTRRRSSSDDSSDSDGGRKSKKRSSSKDYSE 87
>At4g37450.1 68417.m05301 arabinogalactan-protein (AGP18) identical
to gi_11935088_gb_AAG41964
Length = 209
Score = 27.5 bits (58), Expect = 7.2
Identities = 14/38 (36%), Positives = 18/38 (47%)
Frame = -2
Query: 232 AVRSSRFCGGMLPSASTSSFSQGSRRPGPCSSNRPPAT 119
AV S P+AS SS + + P P S + PP T
Sbjct: 47 AVTSPTTAPAKTPTASASSPVESPKSPAPVSESSPPPT 84
>At4g24790.1 68417.m03550 expressed protein ; expression supported
by MPSS
Length = 815
Score = 27.5 bits (58), Expect = 7.2
Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Frame = -2
Query: 295 LHVEHLMNLPESNLLKXCCAXAVRSSRFC-GGMLPSASTSSFSQGSRRPGPCSSNRPPAT 119
LH +L +S+ A S R C G +L + S S + S R CSS++ AT
Sbjct: 744 LHKSYLTTRTDSDCASEKPA-VTNSLRSCQGNVLRARSVRSSANASSRMS-CSSDQGDAT 801
Query: 118 ASMSLRSASPGDR 80
++M PG++
Sbjct: 802 SAMCTPHIPPGEK 814
>At4g19600.1 68417.m02880 cyclin family protein similar to cyclin
T2a [Homo sapiens] GI:2981198; contains Pfam profile
PF00134: Cyclin, N-terminal domain
Length = 541
Score = 27.5 bits (58), Expect = 7.2
Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +2
Query: 308 ANTQRAPGSSRATRRSNTDNEHDAPNGEGKIVKTEEKSDCSDTNKK*SI-LRRHDPHASN 484
+N+ GS++AT+ + DN +GE V TE+K + DT K S+ H H S
Sbjct: 305 SNSDNLGGSTKATQNRSNDNG----SGEAGSVITEQKGE-RDTETKDSMHTESHPAHKSR 359
Query: 485 N 487
+
Sbjct: 360 S 360
>At3g01650.1 68416.m00096 copine-related low similarity to SP|Q99829
Copine I {Homo sapiens}
Length = 489
Score = 27.5 bits (58), Expect = 7.2
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = -2
Query: 196 PSASTSSFSQGSRRPGPCSSNRPPATASMSLRSASPGDRAAPADCTTPAVSSSIAYELSG 17
PS+S+ + Q + GP S N PP + SP AP +PA S Y G
Sbjct: 13 PSSSSWASHQSYPQYGPDSYNYPPPPTYAP--APSPAPAPAPVPAPSPASSYGPQYSQEG 70
>At2g43610.1 68415.m05421 glycoside hydrolase family 19 protein
similar to chitinase GI:17799 from [Brassica napus];
contains Pfam profiles PF00182: Chitinase class I,
PF00187: Chitin recognition protein
Length = 281
Score = 27.5 bits (58), Expect = 7.2
Identities = 16/70 (22%), Positives = 25/70 (35%)
Frame = -2
Query: 244 CCAXAVRSSRFCGGMLPSASTSSFSQGSRRPGPCSSNRPPATASMSLRSASPGDRAAPAD 65
C + + C +T ++ + GPC+S P + G R A
Sbjct: 31 CGTNGCKGNMCCSRWGYCGTTKAYCGTGCQSGPCNSKPKPTPTPSGSGGLNAGPRGTIAS 90
Query: 64 CTTPAVSSSI 35
TPA +SI
Sbjct: 91 VITPAFFNSI 100
>At5g13350.1 68418.m01538 auxin-responsive GH3 family protein
similar to auxin-responsive GH3 product [Glycine max]
GI:18591; contains Pfam profile PF03321: GH3
auxin-responsive promoter
Length = 587
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = -3
Query: 372 CSLSVLERLVARELPGARCVFALGSGSMS 286
CS + E +V R P A+CV A+ +GSM+
Sbjct: 278 CSKTSWEAIVKRLWPKAKCVEAVVTGSMA 306
>At5g03140.1 68418.m00262 lectin protein kinase family protein
contains Pfam domains, PF00138: Legume lectins alpha
domain, PF00139: Legume lectins beta domain and PF00069:
Protein kinase domain
Length = 711
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 184 TSSFSQGSRRPGPCSSNRPPATASMSLRSASPGDRAAPAD 65
+SSF + S P P ++ PP++ S S+ + R AD
Sbjct: 260 SSSFEESSESPPPMPNSPPPSSPSSSITPSLSTVRRKTAD 299
>At3g14010.1 68416.m01769 hydroxyproline-rich glycoprotein family
protein similar to Mrs16p (GI:2737884) [Saccharomyces
cerevisiae]; weak similarity to ataxin-2 related protein
(GI:1679686) [Homo sapiens]
Length = 595
Score = 27.1 bits (57), Expect = 9.5
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 5/42 (11%)
Frame = -2
Query: 187 STSSFSQGSRR-----PGPCSSNRPPATASMSLRSASPGDRA 77
S SSF Q + R PGP +S+RP + S S+ S + +++
Sbjct: 424 SESSFGQSASRSSESRPGPSTSSRPGLSPSSSIGSMASSEKS 465
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,191,923
Number of Sequences: 28952
Number of extensions: 237008
Number of successful extensions: 885
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 881
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1187288784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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