Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00040
         (762 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.       28   0.093
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    28   0.093
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    28   0.093
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    22   6.1  

>X72339-1|CAA51066.1|  133|Tribolium castaneum abdominal protein.
          Length = 133

 Score = 27.9 bits (59), Expect = 0.093
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 286 NEK*RHERHEHNTHKEKQKRKVQTQARPQH 375
           NE+ R ER E   HK++Q+ K Q   +  H
Sbjct: 72  NEQARREREEQERHKQQQQEKQQKIEQQTH 101



 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 274 RHKQNEK*RHERHEHNTH 327
           RHKQ ++ + ++ E  TH
Sbjct: 84  RHKQQQQEKQQKIEQQTH 101


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 27.9 bits (59), Expect = 0.093
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 286 NEK*RHERHEHNTHKEKQKRKVQTQARPQH 375
           NE+ R ER E   HK++Q+ K Q   +  H
Sbjct: 223 NEQARREREEQERHKQQQQEKQQKIEQQTH 252



 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 274 RHKQNEK*RHERHEHNTH 327
           RHKQ ++ + ++ E  TH
Sbjct: 235 RHKQQQQEKQQKIEQQTH 252


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 27.9 bits (59), Expect = 0.093
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +1

Query: 286 NEK*RHERHEHNTHKEKQKRKVQTQARPQH 375
           NE+ R ER E   HK++Q+ K Q   +  H
Sbjct: 282 NEQARREREEQERHKQQQQEKQQKIEQQTH 311



 Score = 21.4 bits (43), Expect = 8.1
 Identities = 7/18 (38%), Positives = 12/18 (66%)
 Frame = +1

Query: 274 RHKQNEK*RHERHEHNTH 327
           RHKQ ++ + ++ E  TH
Sbjct: 294 RHKQQQQEKQQKIEQQTH 311


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 10/40 (25%), Positives = 20/40 (50%)
 Frame = +2

Query: 365 GHSTDSGPADHAPRPHSSVFETDSQHNYISNDLDELESDR 484
           GH   +  ++ A R         +++  I++DL++ E DR
Sbjct: 117 GHEWQADVSEEAVRARMQDLTEGAKNMTINDDLEKREKDR 156


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,893
Number of Sequences: 336
Number of extensions: 1976
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)