Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00040
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    31   0.18 
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    31   0.24 
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    27   2.9  
SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25 |Schizosac...    27   3.9  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    26   5.1  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    25   8.9  
SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate transa...    25   8.9  

>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 31.1 bits (67), Expect = 0.18
 Identities = 17/65 (26%), Positives = 31/65 (47%)
 Frame = +1

Query: 193 QGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQ 372
           QG  + R  ++  H S+HKR+      +H+   + +HE H  +   EK K+  + +    
Sbjct: 582 QGSSLSRRASK--HESKHKRD-----SKHEARPESKHESHRESKSAEKDKKDKKDKKEDS 634

Query: 373 HRQRT 387
            R R+
Sbjct: 635 KRSRS 639



 Score = 25.8 bits (54), Expect = 6.7
 Identities = 15/69 (21%), Positives = 30/69 (43%), Gaps = 5/69 (7%)
 Frame = +1

Query: 220 TRTRHSSRHKREC*RYTHRH-----KQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQR 384
           +RT      +++   + H H     ++ EK + +  EH  H+E ++       +P   + 
Sbjct: 709 SRTERKKDTQKQSHDHGHSHSKSHDREKEKEKKKDREHRKHRETEEEDEGPPPQPARPES 768

Query: 385 TRGPRAAPA 411
           TR   A P+
Sbjct: 769 TRPALAPPS 777


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 22/100 (22%), Positives = 45/100 (45%), Gaps = 1/100 (1%)
 Frame = +1

Query: 82  RKPGPASGPPLLQIVPPENKRVRNHNNYTLSHKKTAYQGRPVPRNCTRTR-HSSRHKREC 258
           R P P S     Q   P   R R+ ++ +   +  + + R    + +R+  +SSRH R  
Sbjct: 129 RSPSPHSSVDSHQSRSPVRSRDRDRSSRSSRSRHPSSRSRHRYDDYSRSPPYSSRHSRSR 188

Query: 259 *RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHR 378
            RY  R  ++ +     +E     ++   + ++++RP+ R
Sbjct: 189 RRYEERSSRSSRAHDYDYEDLRDDDRSHERKRSRSRPRER 228


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/52 (25%), Positives = 22/52 (42%)
 Frame = +1

Query: 226 TRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQ 381
           T  +S HK     +    ++    R  RH H+ H+E +  +     RP  R+
Sbjct: 7   TNRTSTHK-----FNETDRETNHSRRHRHHHSRHRESKHGRHDRSERPSSRE 53



 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +1

Query: 226 TRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKR 345
           T HS RH+     +  RH++++  RH+R E  + +E   R
Sbjct: 22  TNHSRRHRH----HHSRHRESKHGRHDRSERPSSREAGDR 57


>SPBC146.05c |cwf25||complexed with Cdc5 protein Cwf25
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 376

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 24/97 (24%), Positives = 38/97 (39%)
 Frame = +1

Query: 109 PLLQIVPPENKRVRNHNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQN 288
           PLL I   E K+++     TL  K+         R     RH  RH R        ++  
Sbjct: 138 PLLAIKQQEQKQLQ-----TLMEKRK--YSLDSDRKSKERRHRDRHHRS-------NQDR 183

Query: 289 EK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTRGPR 399
            + R +  +H++ K +  R+     R   R+RT   R
Sbjct: 184 SRERSDNEQHSSDKREHSRRSYRNDRNNWRERTHNDR 220


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = +1

Query: 655 PVLNGYGLLDRDISYVNDRPISQMNQG 735
           PV NG+G+  R+  Y N+R   + +QG
Sbjct: 84  PVSNGFGVSRRETHYGNNRTYYKNSQG 110


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +2

Query: 371 STDSGPADHAPRPHSSVFETDSQHNYISNDLDELESDRHSL 493
           +T +  +   P   +SVF  D  H+    DL  + + +HSL
Sbjct: 218 TTSTNTSTVIPSNPNSVFLVDCTHSQCPTDLPNIATTQHSL 258


>SPBC12C2.11 ||SPBC21D10.02|glutamine-fructose-6-phosphate
           transaminase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 696

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 136 NKRVRNHNNYTLSHKKTAYQGRPVPRNC 219
           NK  +  N+  +SH + A  G P P NC
Sbjct: 72  NKSTKFINHCAISHTRWATHGIPSPINC 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,983,942
Number of Sequences: 5004
Number of extensions: 31238
Number of successful extensions: 126
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 121
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)