Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00040
(762 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_01_0373 - 2904914-2904949,2905030-2905144,2906446-2906534,290... 34 0.14
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 33 0.19
08_01_0397 - 3509186-3510291,3510322-3512335 31 1.3
05_04_0028 + 17302359-17302445,17303887-17303952,17305415-173054... 31 1.3
05_03_0067 + 7986527-7986915,7987499-7987606,7987781-7988210 31 1.3
03_05_0720 + 27114301-27114548,27114647-27114926,27115104-271151... 30 1.7
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 30 1.7
04_04_1699 + 35462160-35462555,35463114-35463196,35463317-354633... 29 3.1
03_05_0459 + 24533233-24533278,24533881-24534167,24534287-245345... 29 3.1
03_01_0401 - 3108477-3108689,3108787-3108933,3109022-3109234,310... 29 5.3
03_05_0977 + 29355824-29357056 28 7.1
03_05_0175 + 21513767-21513903,21534361-21535385,21537375-215375... 28 7.1
11_06_0490 - 24293218-24293373,24293454-24293521,24293845-242939... 28 9.3
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 28 9.3
08_01_0151 + 1186678-1187042,1187926-1188043 28 9.3
07_03_0562 + 19535801-19535865,19535972-19536017,19536125-195362... 28 9.3
03_04_0230 - 19024413-19024574,19024916-19024995,19025200-19025509 28 9.3
>03_01_0373 -
2904914-2904949,2905030-2905144,2906446-2906534,
2906670-2906889,2907921-2907985,2908619-2908879,
2909204-2909417,2910643-2910698,2910891-2910947,
2911043-2911115,2912711-2913225
Length = 566
Score = 33.9 bits (74), Expect = 0.14
Identities = 29/95 (30%), Positives = 43/95 (45%), Gaps = 5/95 (5%)
Frame = +1
Query: 133 ENKRVRNHNNYTLSHKKTAYQGRPVPRNCTRTRH-SSRHKREC*RYTHR-HKQNEK*RH- 303
E + R+ + K + R R+ R RH SSR +R+ R R K EK R
Sbjct: 53 ERRSKRSRSEENRDRDKDKDRDRHRDRDKDRDRHRSSRERRDRDRDRDRDEKDREKERDK 112
Query: 304 --ERHEHNTHKEKQKRKVQTQARPQHRQRTRGPRA 402
ER + KEK+K K + + R + R+R R+
Sbjct: 113 DKERRSRDREKEKEKEKEREREREKDRERRSRSRS 147
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 33.5 bits (73), Expect = 0.19
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 196 GRPVPRNCTRTR-HSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQ 372
G PV R R H +H + R+ HRH +++ RH H H+ +Q+R +T+ P+
Sbjct: 113 GTPVLVRRWRPRDHRDQHDHQSQRHHHRHHHHQRQRHHHH----HQRQQRRGSRTR-DPR 167
Query: 373 HRQRTRGPRAAP 408
R RGP P
Sbjct: 168 VR---RGPLRIP 176
>08_01_0397 - 3509186-3510291,3510322-3512335
Length = 1039
Score = 30.7 bits (66), Expect = 1.3
Identities = 20/76 (26%), Positives = 34/76 (44%), Gaps = 6/76 (7%)
Frame = +1
Query: 223 RTRHSSRHKRE------C*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQR 384
R R SSRH R+ R+ HR +++ +R H+EK++ + + +AR + +
Sbjct: 21 RERSSSRHHRDRDRERSSSRHHHREDRDDDRDRDRDRERRHREKERDREERKAREREERE 80
Query: 385 TRGPRAAPALLGLRDR 432
R RDR
Sbjct: 81 KEKERERARRREERDR 96
>05_04_0028 +
17302359-17302445,17303887-17303952,17305415-17305489,
17305638-17305737,17305819-17305865,17305937-17305994,
17306161-17306210,17306417-17306473,17306561-17306703,
17306793-17306834,17307083-17307124,17308239-17308272,
17308342-17308443,17310373-17310652,17311202-17311332,
17311676-17311773,17312525-17312717
Length = 534
Score = 30.7 bits (66), Expect = 1.3
Identities = 23/101 (22%), Positives = 49/101 (48%)
Frame = +1
Query: 142 RVRNHNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERHEHN 321
RVR +++ S ++ +GR R+ +R+R SR ++ ++ + R H+
Sbjct: 180 RVREYDSAKRSRSRS--RGRSHSRSISRSRSRSRSISRSRSRSYSRSRSPRSRSASRSHS 237
Query: 322 THKEKQKRKVQTQARPQHRQRTRGPRAAPALLGLRDRLATQ 444
KE+ + Q+++ + R +R P PA R++ A++
Sbjct: 238 PVKERSRSASQSRSPVKERSPSRSP--PPATSPPREKSASK 276
>05_03_0067 + 7986527-7986915,7987499-7987606,7987781-7988210
Length = 308
Score = 30.7 bits (66), Expect = 1.3
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Frame = +1
Query: 103 GPPLLQIVPPENKRVRNHNNYTLSHKKTA-YQGRPVPRNCTRTRHSSRHKREC*RYTHRH 279
G +++ P E+KR R + N T Y G + + ++S H+R R +++H
Sbjct: 116 GDDQVKVKPHEHKRSRRYTNSTSQITAVPHYDGHQWRKYGQKNINNSNHQRSYYRCSYKH 175
Query: 280 KQNEK 294
+QN K
Sbjct: 176 EQNCK 180
>03_05_0720 +
27114301-27114548,27114647-27114926,27115104-27115154,
27115679-27116000,27116610-27116718,27116754-27116802
Length = 352
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 172 SHKKTAYQGRPVPRNCTRTRHSSRHKREC*R 264
+HK+ A P+ ++C R R SS ++R C R
Sbjct: 43 NHKQVASVANPLVKHCVRLRLSSAYRRSCRR 73
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 30.3 bits (65), Expect = 1.7
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = +1
Query: 271 HRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQR 384
H+ + H +HE ++H E ++ + ++ A +HR R
Sbjct: 400 HKQHSSRDYSHSKHERSSHTEHRRDRKESSASDKHRHR 437
>04_04_1699 +
35462160-35462555,35463114-35463196,35463317-35463378,
35463745-35463806,35463932-35463991,35464079-35464111,
35464196-35464261,35464349-35464393
Length = 268
Score = 29.5 bits (63), Expect = 3.1
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +1
Query: 298 RHERHEHNTHKEKQKRKVQTQARPQHRQRTRGPRAAP 408
+H R H+ + +++ P R RTRGP A P
Sbjct: 40 KHRRLRHDADAQPPRKRGHPPPPPPRRTRTRGPPARP 76
>03_05_0459 +
24533233-24533278,24533881-24534167,24534287-24534568,
24534628-24534682,24534895-24534935,24537484-24537549
Length = 258
Score = 29.5 bits (63), Expect = 3.1
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +1
Query: 280 KQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTR 390
K K + + +H HKEK K K + Q + +HR + R
Sbjct: 122 KSKIKSKDKVKKHKRHKEKDKDKYKDQKKHKHRHKDR 158
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/46 (23%), Positives = 25/46 (54%)
Frame = +1
Query: 241 RHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHR 378
+HKR + ++K +K +H + + KEK+K K + + + + +
Sbjct: 133 KHKRHKEKDKDKYKDQKKHKHRHKDRSKDKEKEKEKEKEKEKKKDK 178
>03_01_0401 -
3108477-3108689,3108787-3108933,3109022-3109234,
3109321-3109938,3110045-3110584,3110941-3111041,
3111208-3111325,3111450-3111535,3111888-3112002
Length = 716
Score = 28.7 bits (61), Expect = 5.3
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 73 PTGRKPGPASGPPLLQIVPPE 135
P G K GPA+ PL +PPE
Sbjct: 62 PAGAKKGPAASQPLSVAIPPE 82
>03_05_0977 + 29355824-29357056
Length = 410
Score = 28.3 bits (60), Expect = 7.1
Identities = 14/54 (25%), Positives = 24/54 (44%)
Frame = +3
Query: 174 SQENGISGSSSPTELHTDTAQQQAQTRMLKIHTPTQTEREIKTRTARAQHTQRK 335
S E + P +LH D Q Q + R+ + PT+ E + T R + + +
Sbjct: 40 SYEKKAYHENEPNDLHKDDDQNQGEIRLGRKDLPTKLEADSSTLDERIEDEENE 93
>03_05_0175 +
21513767-21513903,21534361-21535385,21537375-21537547,
21537849-21538679
Length = 721
Score = 28.3 bits (60), Expect = 7.1
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +1
Query: 268 THRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTRGPR 399
T +Q ++ + R + HK+ QK++ Q Q + Q + + + PR
Sbjct: 591 TKPEEQQQQQKTNRPQEQQHKKPQKKQQQQQQQQQSKPQEKRPR 634
>11_06_0490 -
24293218-24293373,24293454-24293521,24293845-24293986,
24294079-24294699,24294791-24294871,24295002-24295072,
24296106-24296176,24296568-24296675,24296786-24297024,
24297493-24297657
Length = 573
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/58 (22%), Positives = 23/58 (39%)
Frame = +1
Query: 223 RTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTRGP 396
+ R RH+ R R + + +R H +++R +HR R+R P
Sbjct: 97 KDRDRDRHREHRDRSERREHHDRERSDDRDRRRGHDSERRRDRDRDGHRRHRSRSRSP 154
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 27.9 bits (59), Expect = 9.3
Identities = 27/113 (23%), Positives = 39/113 (34%), Gaps = 2/113 (1%)
Frame = +1
Query: 73 PTGRKPGPASGPPLLQIVPPENKRVRNHNNYTLSHKKTAYQGRP--VPRNCTRTRHSSRH 246
P P P S PP PP L+ Q +PR T +R
Sbjct: 106 PPPPPPPPPSPPPSAPPPPPPPPTQPPPREAQLAPPPPREQQSKSALPRAETEEERRARK 165
Query: 247 KREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTRGPRAA 405
KRE + ++N++ + K +Q R Q H+Q + G R A
Sbjct: 166 KREYEKQRAEDRKNQQMMRQSQATVLQKTQQVRAAQQPQSRHHQQPSGGSRPA 218
>08_01_0151 + 1186678-1187042,1187926-1188043
Length = 160
Score = 27.9 bits (59), Expect = 9.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 307 RHEHNTHKEKQKRKVQTQARPQHRQRTRGP 396
R H ++K+KRK ++ AR R+ +GP
Sbjct: 98 RRRHEDARDKRKRKARSAARRFRRRHFKGP 127
>07_03_0562 +
19535801-19535865,19535972-19536017,19536125-19536223,
19536588-19536674,19537545-19537613,19537702-19538710,
19539217-19539365,19539453-19540487,19540488-19541003
Length = 1024
Score = 27.9 bits (59), Expect = 9.3
Identities = 17/77 (22%), Positives = 34/77 (44%)
Frame = +1
Query: 145 VRNHNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNT 324
VRN ++ S + RP+ RN SS HK + + R+ +N++ +H+
Sbjct: 229 VRNSDDDLSSSFQKEQVKRPISRNSGDDISSSFHKEQGRKVISRNSENDRVASFHKQHDK 288
Query: 325 HKEKQKRKVQTQARPQH 375
+ K + ++ +H
Sbjct: 289 RPTSRSSKDELPSQKKH 305
>03_04_0230 - 19024413-19024574,19024916-19024995,19025200-19025509
Length = 183
Score = 27.9 bits (59), Expect = 9.3
Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Frame = +1
Query: 640 PQLKGPVLN-GYGLLDRDISYVNDRPISQMNQ 732
P L GP+ GY +L IS V ++P +NQ
Sbjct: 20 PPLSGPIFTTGYKILPELISMVKEKPFPGLNQ 51
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,325,060
Number of Sequences: 37544
Number of extensions: 251402
Number of successful extensions: 1065
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1043
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -