Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00040
(762 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 34 0.096
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 34 0.096
U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical pr... 34 0.13
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 34 0.13
AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical ... 33 0.17
Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z50755-2|CAA90633.1| 444|Caenorhabditis elegans Hypothetical pr... 30 1.6
AC084197-15|AAN63425.1| 391|Caenorhabditis elegans Hypothetical... 30 1.6
AC084197-14|AAM44396.1| 526|Caenorhabditis elegans Hypothetical... 30 1.6
AC084197-13|AAM44395.1| 571|Caenorhabditis elegans Hypothetical... 30 1.6
AF098993-9|AAC67463.3| 469|Caenorhabditis elegans Hypothetical ... 30 2.1
Z68119-1|CAA92191.1| 523|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z50029-8|CAA90342.2| 668|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z75546-6|CAA99894.1| 155|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z48009-2|CAA88077.1| 230|Caenorhabditis elegans Hypothetical pr... 29 4.8
U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical p... 29 4.8
U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing facto... 29 4.8
U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing facto... 29 4.8
U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor... 29 4.8
U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein. 29 4.8
Z99281-12|CAB16521.1| 649|Caenorhabditis elegans Hypothetical p... 28 6.3
Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical pr... 28 6.3
AL132860-26|CAB60511.2| 700|Caenorhabditis elegans Hypothetical... 28 6.3
AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like fact... 28 6.3
AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like fact... 28 6.3
AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical ... 28 6.3
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 34.3 bits (75), Expect = 0.096
Identities = 24/107 (22%), Positives = 47/107 (43%)
Frame = +1
Query: 79 GRKPGPASGPPLLQIVPPENKRVRNHNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC 258
G P + PP +VP + N + + + R R+ R R R K++
Sbjct: 26 GAAPSATAAPPPALVVPTISSMSSGDNKSPSRSESVSDRKRDRSRSRDRDRKKDRKKKDR 85
Query: 259 *RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTRGPR 399
R R +++ + R R + +E+++R+ ++ P+ R R+ G R
Sbjct: 86 SRERDRERRSSRSR-SRSPRDRDRERRRRRSRSPP-PRRRSRSGGDR 130
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 34.3 bits (75), Expect = 0.096
Identities = 24/107 (22%), Positives = 47/107 (43%)
Frame = +1
Query: 79 GRKPGPASGPPLLQIVPPENKRVRNHNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC 258
G P + PP +VP + N + + + R R+ R R R K++
Sbjct: 26 GAAPSATAAPPPALVVPTISSMSSGDNKSPSRSESVSDRKRDRSRSRDRDRKKDRKKKDR 85
Query: 259 *RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTRGPR 399
R R +++ + R R + +E+++R+ ++ P+ R R+ G R
Sbjct: 86 SRERDRERRSSRSR-SRSPRDRDRERRRRRSRSPP-PRRRSRSGGDR 130
>U41538-3|AAP31431.1| 142|Caenorhabditis elegans Hypothetical
protein R04E5.8b protein.
Length = 142
Score = 33.9 bits (74), Expect = 0.13
Identities = 21/85 (24%), Positives = 35/85 (41%)
Frame = +1
Query: 148 RNHNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTH 327
R HN H + + G P N R RH + +RH+ ++ RH + N
Sbjct: 62 RAHNRGQ-HHNRGHHHGPPRNHNQDRNRHRNHDG-------NRHQNQDRSRHHNQDRNRR 113
Query: 328 KEKQKRKVQTQARPQHRQRTRGPRA 402
+ + + Q+Q R + + RG A
Sbjct: 114 QNHDRNRHQSQGRNRQQDHERGDEA 138
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical protein
R04E5.8a protein.
Length = 997
Score = 33.9 bits (74), Expect = 0.13
Identities = 21/85 (24%), Positives = 35/85 (41%)
Frame = +1
Query: 148 RNHNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTH 327
R HN H + + G P N R RH + +RH+ ++ RH + N
Sbjct: 906 RAHNRGQ-HHNRGHHHGPPRNHNQDRNRHRNHDG-------NRHQNQDRSRHHNQDRNRR 957
Query: 328 KEKQKRKVQTQARPQHRQRTRGPRA 402
+ + + Q+Q R + + RG A
Sbjct: 958 QNHDRNRHQSQGRNRQQDHERGDEA 982
>AC006714-6|AAN84810.2| 339|Caenorhabditis elegans Hypothetical
protein Y119D3B.12a protein.
Length = 339
Score = 33.5 bits (73), Expect = 0.17
Identities = 16/72 (22%), Positives = 31/72 (43%)
Frame = +1
Query: 172 SHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKV 351
S ++ +G R+ + HS R R+ HRH+ + E EH H+ + +
Sbjct: 263 SRSRSTDRGADRKRSTEQHHHSHRSSRD--HRDHRHRDHRGEHREHREHKEHRRDDRHRS 320
Query: 352 QTQARPQHRQRT 387
+ R + +R+
Sbjct: 321 ERSERSERSERS 332
Score = 30.7 bits (66), Expect = 1.2
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Frame = +1
Query: 181 KTAYQGRPVPRNCTRTRHSSR---HKREC*RYTHRHKQNEK*RHERH-----EHNTHKEK 336
+T+ Q + R +R+R + R KR ++ H H+ + R RH EH H+E
Sbjct: 250 QTSQQKAEMKRKRSRSRSTDRGADRKRSTEQHHHSHRSSRDHRDHRHRDHRGEHREHREH 309
Query: 337 QKRKVQTQARPQHRQRT 387
++ + + R + +R+
Sbjct: 310 KEHRRDDRHRSERSERS 326
>Z68011-3|CAA92014.2| 821|Caenorhabditis elegans Hypothetical
protein T21B6.3 protein.
Length = 821
Score = 30.7 bits (66), Expect = 1.2
Identities = 17/62 (27%), Positives = 30/62 (48%)
Frame = +1
Query: 271 HRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTRGPRAAPALLGLRDRLATQLH 450
HR Q +H++ + +++Q+R Q Q +PQ + R P+ + G +LH
Sbjct: 236 HREHQARLQQHQQQQQQQQQQQQQRPPQPQPQPQPQPPQRPPQQPQSFSGTH-----ELH 290
Query: 451 LQ 456
LQ
Sbjct: 291 LQ 292
>Z50755-2|CAA90633.1| 444|Caenorhabditis elegans Hypothetical
protein R12H7.2 protein.
Length = 444
Score = 30.3 bits (65), Expect = 1.6
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +2
Query: 371 STDSGPADHAPRPHSSVFETDSQHNYISND 460
+ D P D APRP SVF+ +S+ + +D
Sbjct: 414 TADGRPVDPAPRPFRSVFDNESEESMEQDD 443
>AC084197-15|AAN63425.1| 391|Caenorhabditis elegans Hypothetical
protein Y73B6BL.5c protein.
Length = 391
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/61 (22%), Positives = 27/61 (44%)
Frame = +1
Query: 208 PRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRT 387
PR +H +HR ++++K R + +H HKE+++ Q H++
Sbjct: 207 PRTSENDDKDKKHHGSSSSNSHRRREDDKDRRQSSDH--HKERRRSPATRQRATDHKESR 264
Query: 388 R 390
R
Sbjct: 265 R 265
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = +1
Query: 268 THRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTRGP 396
T + +K H N+H+ ++ K + Q+ H++R R P
Sbjct: 209 TSENDDKDKKHHGSSSSNSHRRREDDKDRRQSSDHHKERRRSP 251
>AC084197-14|AAM44396.1| 526|Caenorhabditis elegans Hypothetical
protein Y73B6BL.5b protein.
Length = 526
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/61 (22%), Positives = 27/61 (44%)
Frame = +1
Query: 208 PRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRT 387
PR +H +HR ++++K R + +H HKE+++ Q H++
Sbjct: 342 PRTSENDDKDKKHHGSSSSNSHRRREDDKDRRQSSDH--HKERRRSPATRQRATDHKESR 399
Query: 388 R 390
R
Sbjct: 400 R 400
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = +1
Query: 268 THRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTRGP 396
T + +K H N+H+ ++ K + Q+ H++R R P
Sbjct: 344 TSENDDKDKKHHGSSSSNSHRRREDDKDRRQSSDHHKERRRSP 386
>AC084197-13|AAM44395.1| 571|Caenorhabditis elegans Hypothetical
protein Y73B6BL.5a protein.
Length = 571
Score = 30.3 bits (65), Expect = 1.6
Identities = 14/61 (22%), Positives = 27/61 (44%)
Frame = +1
Query: 208 PRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRT 387
PR +H +HR ++++K R + +H HKE+++ Q H++
Sbjct: 387 PRTSENDDKDKKHHGSSSSNSHRRREDDKDRRQSSDH--HKERRRSPATRQRATDHKESR 444
Query: 388 R 390
R
Sbjct: 445 R 445
Score = 29.1 bits (62), Expect = 3.6
Identities = 11/43 (25%), Positives = 21/43 (48%)
Frame = +1
Query: 268 THRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTRGP 396
T + +K H N+H+ ++ K + Q+ H++R R P
Sbjct: 389 TSENDDKDKKHHGSSSSNSHRRREDDKDRRQSSDHHKERRRSP 431
>AF098993-9|AAC67463.3| 469|Caenorhabditis elegans Hypothetical
protein T10B11.8 protein.
Length = 469
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 1/81 (1%)
Frame = +1
Query: 136 NKRVRNHNNYTLSHKKT-AYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERH 312
N + +NY + +++T +Y P+P N R HK + T H++N+ E++
Sbjct: 345 NHYTNSFDNYRMGNEQTTSYDHHPIPVNVRRLYPLQSHKNIIKQDTWPHEKNK----EKY 400
Query: 313 EHNTHKEKQKRKVQTQARPQH 375
+ N ++K R H
Sbjct: 401 DFNLKNVEKKNDSTKSDRKSH 421
>Z68119-1|CAA92191.1| 523|Caenorhabditis elegans Hypothetical
protein T18D3.1 protein.
Length = 523
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = +1
Query: 172 SHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKV 351
S K + R + R R + K+E + HR ++ K + ++HE + ++KRK
Sbjct: 428 SSKHETKEERKARKEKERERAEKKAKKE--KDGHREEEKPKKKDKKHETEEERAERKRKE 485
Query: 352 QTQARPQHRQ 381
+ + Q R+
Sbjct: 486 KKEKERQERK 495
Score = 28.3 bits (60), Expect = 6.3
Identities = 11/58 (18%), Positives = 30/58 (51%)
Frame = +1
Query: 211 RNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQR 384
R + + R +++ + H++ EK + + +H T +E+ +RK + + + ++R
Sbjct: 437 RKARKEKERERAEKKAKKEKDGHREEEKPKKKDKKHETEEERAERKRKEKKEKERQER 494
>Z50029-8|CAA90342.2| 668|Caenorhabditis elegans Hypothetical
protein ZC504.3 protein.
Length = 668
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +1
Query: 229 RHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTR 390
R+S + K E RY + K+ + HERH ++ + RKV ++ HR R R
Sbjct: 31 RNSHKTKEE--RYRDKEKERD---HERHHDRERRDDRYRKVDSR---DHRDRNR 76
>Z75546-6|CAA99894.1| 155|Caenorhabditis elegans Hypothetical
protein R05D11.7 protein.
Length = 155
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/60 (25%), Positives = 26/60 (43%)
Frame = +1
Query: 223 RTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTRGPRA 402
R+R R +R R R ++ + R R EK+KR ++++ R R R+
Sbjct: 5 RSRSRDRKRRSRSRSVERRRERSRSRERRDARKNRDEKEKRSSRSRSPRDKRDRRERSRS 64
>Z48009-2|CAA88077.1| 230|Caenorhabditis elegans Hypothetical
protein AH6.3 protein.
Length = 230
Score = 28.7 bits (61), Expect = 4.8
Identities = 24/97 (24%), Positives = 40/97 (41%), Gaps = 2/97 (2%)
Frame = +1
Query: 130 PENKRVRNHNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC*-RYTHRHKQNEK*RHE 306
P N + N + K + + + T + S K E + T K + K + E
Sbjct: 84 PANSKKSNKSKKPEKGSKKSKKSEKSKKKKTEEKVMSEDKPERPDKLTEEEKPDAKEKKE 143
Query: 307 RHEHNT-HKEKQKRKVQTQARPQHRQRTRGPRAAPAL 414
+ T KEK K K +TQ + + + T + AP+L
Sbjct: 144 IEKEKTKEKEKTKEKEKTQEKEKSKDETVPKQHAPSL 180
>U64598-15|AAK39219.1| 1336|Caenorhabditis elegans Hypothetical
protein C52B9.8 protein.
Length = 1336
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/38 (31%), Positives = 25/38 (65%)
Frame = +1
Query: 277 HKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTR 390
HK+ EK + + E + KEK+K K + + + +H++++R
Sbjct: 1234 HKEKEKDKEKEKEEDKGKEKEKHKDKDKDK-EHKKKSR 1270
>U32305-11|AAL50323.1| 663|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
b protein.
Length = 663
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/74 (20%), Positives = 31/74 (41%)
Frame = +1
Query: 127 PPENKRVRNHNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHE 306
P E + + + H+K + + R R+C+ S HK+ H ++ +
Sbjct: 591 PVEEMKRTDEDRERKRHRKRS-RSRRRSRSCSPRDRSREHKKSRKSGRHHRSRSRSSSRD 649
Query: 307 RHEHNTHKEKQKRK 348
RH N + + +R+
Sbjct: 650 RHRRNRSRSRDRRR 663
>U32305-10|AAM75378.1| 749|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
a protein.
Length = 749
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/74 (20%), Positives = 31/74 (41%)
Frame = +1
Query: 127 PPENKRVRNHNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHE 306
P E + + + H+K + + R R+C+ S HK+ H ++ +
Sbjct: 677 PVEEMKRTDEDRERKRHRKRS-RSRRRSRSCSPRDRSREHKKSRKSGRHHRSRSRSSSRD 735
Query: 307 RHEHNTHKEKQKRK 348
RH N + + +R+
Sbjct: 736 RHRRNRSRSRDRRR 749
>U32305-9|AAM75380.1| 751|Caenorhabditis elegans Splicing factor
(suppressor ofwhite apricot) related protein 1, isoform
d protein.
Length = 751
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/74 (20%), Positives = 31/74 (41%)
Frame = +1
Query: 127 PPENKRVRNHNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHE 306
P E + + + H+K + + R R+C+ S HK+ H ++ +
Sbjct: 679 PVEEMKRTDEDRERKRHRKRS-RSRRRSRSCSPRDRSREHKKSRKSGRHHRSRSRSSSRD 737
Query: 307 RHEHNTHKEKQKRK 348
RH N + + +R+
Sbjct: 738 RHRRNRSRSRDRRR 751
>U06932-1|AAA64937.1| 749|Caenorhabditis elegans CeSWAP protein.
Length = 749
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/74 (20%), Positives = 31/74 (41%)
Frame = +1
Query: 127 PPENKRVRNHNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHE 306
P E + + + H+K + + R R+C+ S HK+ H ++ +
Sbjct: 677 PVEEMKRTDEDRERKRHRKRS-RSRRRSRSCSPRDRSREHKKSRKSGRHHRSRSRSSSRD 735
Query: 307 RHEHNTHKEKQKRK 348
RH N + + +R+
Sbjct: 736 RHRRNRSRSRDRRR 749
>Z99281-12|CAB16521.1| 649|Caenorhabditis elegans Hypothetical
protein Y57G11C.20 protein.
Length = 649
Score = 28.3 bits (60), Expect = 6.3
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +1
Query: 199 RPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQ---KRKVQTQARP 369
R R H +RHK+ + +Q EK ++E E T KE++ +R Q +AR
Sbjct: 223 RRAKEKADRDAHVARHKQAEALEKKKREQEEKQKNEDRERATQKERREHIERHRQAEARA 282
Query: 370 QHRQRTR 390
+ ++ +
Sbjct: 283 KALEKEK 289
>Z81079-5|CAB03082.2| 505|Caenorhabditis elegans Hypothetical
protein F39H11.2 protein.
Length = 505
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 271 HRHKQ-NEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTRGPRAAPALLGLRDRLATQL 447
HR +Q N++ H++ +H H +Q + + +PQ + P + R ++A Q
Sbjct: 150 HRQQQQNQQQHHQQPQHFNHPSQQNQMIMQHRQPQMHHNQQHQMVQPQM--TRHQMA-QH 206
Query: 448 HLQ*P 462
H Q P
Sbjct: 207 HAQQP 211
>AL132860-26|CAB60511.2| 700|Caenorhabditis elegans Hypothetical
protein Y56A3A.32 protein.
Length = 700
Score = 28.3 bits (60), Expect = 6.3
Identities = 9/37 (24%), Positives = 23/37 (62%)
Frame = +1
Query: 262 RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQ 372
+++ +H++ + +HE EH ++K++ K + A P+
Sbjct: 112 KHSKKHEEKHEQKHEEKEHAEPEKKEEAKPEKPAEPK 148
>AJ238443-1|CAB41469.1| 454|Caenorhabditis elegans TBP-like factor
protein.
Length = 454
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 271 HRHKQ-NEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTRGPRAAPALLGLRDRLATQL 447
HR +Q N++ H++ +H H +Q + + +PQ + P + R ++A Q
Sbjct: 150 HRQQQQNQQQHHQQPQHFNHPSQQNQMIMQHRQPQMHHNQQHQMVQPQM--TRHQMA-QH 206
Query: 448 HLQ*P 462
H Q P
Sbjct: 207 HAQQP 211
>AF228692-1|AAF59926.1| 505|Caenorhabditis elegans TBP-like factor
protein.
Length = 505
Score = 28.3 bits (60), Expect = 6.3
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 271 HRHKQ-NEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTRGPRAAPALLGLRDRLATQL 447
HR +Q N++ H++ +H H +Q + + +PQ + P + R ++A Q
Sbjct: 150 HRQQQQNQQQHHQQPQHFNHPSQQNQMIMQHRQPQMHHNQQHQMVQPQM--TRHQMA-QH 206
Query: 448 HLQ*P 462
H Q P
Sbjct: 207 HAQQP 211
>AF045641-1|AAK68386.1| 970|Caenorhabditis elegans Hypothetical
protein F53H1.1 protein.
Length = 970
Score = 28.3 bits (60), Expect = 6.3
Identities = 12/49 (24%), Positives = 24/49 (48%)
Frame = +1
Query: 244 HKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTR 390
HKR+ R R + + EH H+++ + + + + R R++TR
Sbjct: 9 HKRKRSRSKERKRSRSRSPRGSREHREHRDRDRDRERRRERDTDREKTR 57
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,568,761
Number of Sequences: 27780
Number of extensions: 203410
Number of successful extensions: 1307
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 1054
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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