Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00040
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    25   1.0  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    24   1.3  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    24   1.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          24   1.8  
AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex det...    23   2.3  
AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    23   3.1  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.1  
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    23   4.1  
DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex det...    22   5.4  
DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex det...    22   5.4  
DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex det...    22   5.4  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   5.4  
DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex det...    22   7.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   9.4  
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    21   9.4  

>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
           finger domain-Z1 isoform protein.
          Length = 111

 Score = 24.6 bits (51), Expect = 1.0
 Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 1/82 (1%)
 Frame = +1

Query: 142 RVRNHNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHR-HKQNEK*RHERHEH 318
           R+R H    + +  T     P+   C R   S    R      HR H +NE+ R E  E 
Sbjct: 17  RLRRH----IQNVHTRPSKEPICNICKRVYSSLNSLRNHKSIYHRQHSKNEQQRKEM-EQ 71

Query: 319 NTHKEKQKRKVQTQARPQHRQR 384
              +E+++R+   +   Q +Q+
Sbjct: 72  MREREREQREHSDRVTSQQQQQ 93


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 754 SPSGPANPGSF 722
           SPSGP +PGSF
Sbjct: 64  SPSGPNSPGSF 74


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = -3

Query: 754 SPSGPANPGSF 722
           SPSGP +PGSF
Sbjct: 64  SPSGPNSPGSF 74


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +1

Query: 139 KRVRNHNNYTLSHKKTAYQGRPVPRNCT 222
           K   ++ NY   HK+T    +P    CT
Sbjct: 180 KEEESNENYNWEHKETHIDWQPEDEECT 207


>AY569698-1|AAS86651.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +1

Query: 136 NKRVRNHNNYTLSHKKTAY 192
           NK + N+NNY   +KK  Y
Sbjct: 320 NKTIHNNNNYKNYNKKLYY 338


>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +1

Query: 610 AGLVDGGHLLPQLKGPVLNGYGLLDRDI 693
           +GLV+GG    +L   +L+ Y +L+R +
Sbjct: 15  SGLVNGGSHEKRLLNDLLDTYNVLERPV 42


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 7/9 (77%), Positives = 8/9 (88%)
 Frame = -2

Query: 461 GHWRCSCVA 435
           GHW+ SCVA
Sbjct: 383 GHWQMSCVA 391


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = +1

Query: 136 NKRVRNHNNYTLSHKKTAYQGRPVPRN 216
           NK + N+NNY  ++    Y       N
Sbjct: 320 NKTIHNNNNYKYNYNNNNYNNNNYNNN 346


>DQ325080-1|ABD14094.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 136 NKRVRNHNNYTLSHKKTAY 192
           NK + N+NNY  ++    Y
Sbjct: 87  NKTIHNNNNYKYNYNNNNY 105


>DQ325079-1|ABD14093.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 136 NKRVRNHNNYTLSHKKTAY 192
           NK + N+NNY  ++    Y
Sbjct: 87  NKTIHNNNNYKYNYNNNNY 105


>DQ325078-1|ABD14092.1|  184|Apis mellifera complementary sex
           determiner protein.
          Length = 184

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = +1

Query: 136 NKRVRNHNNYTLSHKKTAY 192
           NK + N+NNY  ++    Y
Sbjct: 87  NKTIHNNNNYKYNYNNNNY 105


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 136 NKRVRNHNNYTLSHKKTAY 192
           NK + N+NNY   + K  Y
Sbjct: 309 NKTIHNNNNYNNYNNKKLY 327


>DQ325090-1|ABD14104.1|  178|Apis mellifera complementary sex
           determiner protein.
          Length = 178

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 82  RKPGPASGPPLLQIVPPENKRVRNHNNYTLSHKKTAYQ 195
           RK    S  P +      N +  N+NNY   +KK  Y+
Sbjct: 70  RKERERSKEPKIISSLSNNYKYSNYNNYNNYNKKLYYK 107


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -1

Query: 714 WPIVNITNISVQ*SVAVQHGPLELRQQVTAVDEPGQHVSVPLHHE 580
           +P+  +  IS    + V +GP+   Q +T  D+  Q VSV  + +
Sbjct: 635 FPLQFLVVISSSNPLNVPYGPVIPEQSLTYQDQQYQVVSVEQYQQ 679


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -2

Query: 668 PFSTGPLSCGSR 633
           PFS GP SC  R
Sbjct: 480 PFSAGPRSCVGR 491


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,829
Number of Sequences: 438
Number of extensions: 3092
Number of successful extensions: 24
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)