Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00040
(762 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g20150.1 68416.m02554 kinesin motor family protein contains P... 38 0.010
At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) fa... 36 0.039
At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing ... 31 0.63
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 31 0.63
At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp... 31 0.84
At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp... 31 0.84
At2g04620.1 68415.m00470 cation efflux family protein potential ... 31 0.84
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 31 1.1
At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp... 30 1.5
At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:4... 30 1.5
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil... 30 1.9
At5g55020.1 68418.m06853 myb family transcription factor (MYB120... 29 3.4
At3g15400.1 68416.m01954 anther development protein, putative si... 29 3.4
At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family... 29 3.4
At1g60590.1 68414.m06820 polygalacturonase, putative / pectinase... 29 3.4
At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi... 29 4.5
At5g19480.1 68418.m02321 expressed protein 29 4.5
At5g26610.2 68418.m03181 D111/G-patch domain-containing protein ... 28 5.9
At5g26610.1 68418.m03180 D111/G-patch domain-containing protein ... 28 5.9
At4g11720.1 68417.m01870 hypothetical protein 28 5.9
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 28 5.9
At5g16780.1 68418.m01965 SART-1 family protein contains Pfam dom... 28 7.8
At1g48760.2 68414.m05457 delta-adaptin, putative similar to SP|O... 28 7.8
At1g48760.1 68414.m05456 delta-adaptin, putative similar to SP|O... 28 7.8
At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar... 28 7.8
>At3g20150.1 68416.m02554 kinesin motor family protein contains Pfam
domain, PF00225: Kinesin motor domain
Length = 1114
Score = 37.5 bits (83), Expect = 0.010
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +1
Query: 94 PASGPPLLQIVPPENKRVRNHNNYTLSHKKTAYQGRPVPRNCTRTRHSSR 243
P S P ++ PP+N + N N ++S K TAY+ + NC +SR
Sbjct: 33 PRSSNPDIENAPPQNPNIHNPRNQSVSSKSTAYKNQMDSPNCRSQVSASR 82
>At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 496
Score = 35.5 bits (78), Expect = 0.039
Identities = 19/60 (31%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Frame = +1
Query: 232 HSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQ-HRQRTRGPRAAP 408
HS H + H H + H H H+ K +V A P HR R R P A P
Sbjct: 328 HSKHHHHH--HHHHHHHHHHHHNHHHHHHHNLSPKMAPEVSPVASPAPHRSRKRAPSAPP 385
>At5g55670.1 68418.m06941 RNA recognition motif (RRM)-containing
protein
Length = 710
Score = 31.5 bits (68), Expect = 0.63
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 2/74 (2%)
Frame = +1
Query: 175 HKKTAYQGRPVPRNCTRTRHSSRHKREC*RY--THRHKQNEK*RHERHEHNTHKEKQKRK 348
H K + R R+ R R RH+ E RY HR + ++ H+ + + K
Sbjct: 624 HHKDRERSREHVRDRERERERDRHREERERYGGDHRTRHRDEPEHDEEWNRGRSSRGHNK 683
Query: 349 VQTQARPQHRQRTR 390
+ HR ++R
Sbjct: 684 SRLSREDNHRSKSR 697
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 31.5 bits (68), Expect = 0.63
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Frame = +1
Query: 211 RNCTRTRHSSRHKREC*RYTH--RHKQNEK*RHERHEHNTH---KEKQKRKVQTQARPQH 375
R C + S+ RE +H R K E H+ H ++ K+K+K+K + +PQ
Sbjct: 369 RECPNSSQVSKRDRETSTTSHKSRKKNKENSEHDSTPHESNGKTKKKKKKKTHKEEQPQT 428
Query: 376 RQRTRGPR 399
R R R
Sbjct: 429 SPRKRKHR 436
>At5g55100.2 68418.m06869 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 844
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 247 KREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQR 384
K C R H+HK + +RH + HK + + +R +HR R
Sbjct: 653 KHSCSRKRHKHKTRYSSK-DRHSRDKHKHESSSDDEYHSRSRHRHR 697
>At5g55100.1 68418.m06868 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 843
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +1
Query: 247 KREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQR 384
K C R H+HK + +RH + HK + + +R +HR R
Sbjct: 653 KHSCSRKRHKHKTRYSSK-DRHSRDKHKHESSSDDEYHSRSRHRHR 697
>At2g04620.1 68415.m00470 cation efflux family protein potential
member of the cation diffusion facilitator (CDF) family,
or cation efflux (CE) family, see PMID:11500563
Length = 798
Score = 31.1 bits (67), Expect = 0.84
Identities = 14/63 (22%), Positives = 28/63 (44%)
Frame = +1
Query: 154 HNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKE 333
H+ ++ SHK + ++ +H H+ + ++H HK E + HEH +H
Sbjct: 570 HHQHSDSHKHEEHH-----QHSDSHKHEEHHEHDHHHHSHSHKHEECNHNHDHEHQSHSH 624
Query: 334 KQK 342
+
Sbjct: 625 NHE 627
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Frame = +1
Query: 232 HSSRHKREC*RYTHRHK-QNEK*RHE--RHEHNTHKEKQKRKVQTQARPQHR 378
HS HK E + H H+ Q+ HE H H+ H + Q K + + +HR
Sbjct: 602 HSHSHKHEECNHNHDHEHQSHSHNHEECNHNHDHHSDHQPEKSE---KKEHR 650
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 30.7 bits (66), Expect = 1.1
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 262 RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQR 384
R R + E+ R EH+ +E+Q+ + + +AR + R+R
Sbjct: 362 REDQRARDKEREREREREHDRERERQRERERQRARDRERER 402
>At5g23080.1 68418.m02698 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein contains Pfam domain PF01805:
Surp module
Length = 930
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +1
Query: 136 NKRVRNHNNYTLSHKKTAYQGRPVP--RNCTRTRHSSRHKREC*RYTHRHKQNEK*RHER 309
NK+ R H N + S + Y R R+ ++ R SSR KR + +H++ +K R
Sbjct: 853 NKKDR-HRNDSESDSSSDYHSRDKQGSRSRSKRRESSREKRSSHKKHSKHRRTKKSSSSR 911
Query: 310 HEHNTHKEKQKRK 348
+ + +++ +R+
Sbjct: 912 YSSDEEQKESRRE 924
>At1g54560.1 68414.m06222 myosin, putative similar to myosin GI:433663
from [Arabidopsis thaliana]
Length = 1529
Score = 30.3 bits (65), Expect = 1.5
Identities = 16/58 (27%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +1
Query: 592 RHRDMLAGLVDGGHLLPQLKGPV-LNGYGLLDRDISYVNDRPISQMNQGLLDQKEMLL 762
R R +L + GHL + + L+ + + RD+S V+D+P +N+ + +E+L+
Sbjct: 1067 RSRSILQRGSESGHLSVDARPSLDLHSHSINRRDLSEVDDKPQKSLNEKQQENQELLI 1124
>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
to U2 small nuclear ribonucleoprotein auxiliary factor
35 kD subunit related protein 1 (sp|Q15695)
Length = 757
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Frame = +1
Query: 223 RTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQA---RPQHRQRTR 390
R R RH+R RY+H E H+ E + + + V Q+ R + +QR R
Sbjct: 635 RERSKHRHERSSSRYSHEEDSTESRHHQHKESDKKRSVETSPVGYQSDKDRDRSKQRQR 693
>At5g55020.1 68418.m06853 myb family transcription factor (MYB120)
contains Pfam profile: PF00249 myb-like DNA-binding
domain
Length = 523
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/46 (28%), Positives = 26/46 (56%)
Frame = +1
Query: 271 HRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTRGPRAAP 408
H H +++ + H H+ H+++Q+ + Q +PQ QR P ++P
Sbjct: 148 HPHPHHQQQQQHNHHHHHHQQQQQHQ-QMYFQPQSSQRNT-PSSSP 191
>At3g15400.1 68416.m01954 anther development protein, putative
similar to anther development protein ATA20 GB:AAC50042
GI:2708813 from [Arabidopsis thaliana]
Length = 416
Score = 29.1 bits (62), Expect = 3.4
Identities = 13/40 (32%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Frame = +1
Query: 271 HRHKQNEK*RHERHEHNTHKEKQKRKVQTQ--ARPQHRQR 384
H+ K + K + EH HKEK K+Q+ P+H+++
Sbjct: 102 HKEKPDHKLQSMLGEHPEHKEKPDHKLQSMLGEHPEHKEK 141
>At1g79730.1 68414.m09300 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 589
Score = 29.1 bits (62), Expect = 3.4
Identities = 23/101 (22%), Positives = 41/101 (40%), Gaps = 7/101 (6%)
Frame = +1
Query: 88 PGPASGPPLLQIVPPENKRVRNHNNYTLSHKKTAYQGRPVP---RNCTRTRHSSRHKREC 258
P P S PP L PP ++ +H + +P P + + HS + + E
Sbjct: 75 PPPPSAPPPLVPDPPRHQGPNDHEKGASKQVGRRERAKPDPSKHHHRSHLPHSKKIETEE 134
Query: 259 *RYTHRHKQNEK*R----HERHEHNTHKEKQKRKVQTQARP 369
R + ++ EK R H + N+HK + + + +P
Sbjct: 135 ERRLRKKRELEKQRQDEKHRQQMKNSHKSQMPKGHTEEKKP 175
>At1g60590.1 68414.m06820 polygalacturonase, putative / pectinase,
putative similar to polygalacturonase PG1 (GI:5669846),
PG2 (GI:5669848) from [Glycine max]; contains PF00295:
Glycosyl hydrolases family 28 (polygalacturonases)
Length = 540
Score = 29.1 bits (62), Expect = 3.4
Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Frame = +1
Query: 223 RTRHSSRHKREC*RYTHRHKQNEK*RHER-HEHNTHKEKQKRKVQTQ 360
R RH H R + + HE H H +HK K K K++TQ
Sbjct: 34 RGRHWRHHHRSSSSLSDSLSSKKPKSHENNHHHMSHKSKPKPKMKTQ 80
>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
similarity to unknown protein (ref|NP_005638.1)
Length = 613
Score = 28.7 bits (61), Expect = 4.5
Identities = 12/56 (21%), Positives = 27/56 (48%)
Frame = +1
Query: 223 RTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTR 390
R + RH+++ R R K + ER + KE+++ K++ + + + R +
Sbjct: 132 RAKEKDRHEKQKEREREREKLEREKEREREKIEREKEREREKMEREIFEREKDRLK 187
Score = 27.9 bits (59), Expect = 7.8
Identities = 14/54 (25%), Positives = 29/54 (53%)
Frame = +1
Query: 229 RHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTR 390
R R +R+ + R K+N+K HE + ++ K+K + + Q + + R+R +
Sbjct: 99 REKKRKERDMEKERDRSKENDKGVEREHEGDRNRAKEKDRHEKQ-KEREREREK 151
>At5g19480.1 68418.m02321 expressed protein
Length = 207
Score = 28.7 bits (61), Expect = 4.5
Identities = 11/51 (21%), Positives = 27/51 (52%)
Frame = +1
Query: 238 SRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTR 390
S+ K E +H++++ + + EH HK K K +++ + + + R + +
Sbjct: 117 SKSKSESKDKDRKHRKHKDKKEKDREHKKHKHKHKDRIKDKDKDKDRDKKK 167
>At5g26610.2 68418.m03181 D111/G-patch domain-containing protein
contains Pfam PF01585: G-patch domain
Length = 301
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 265 YTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQAR 366
Y H HK+ K E H + E++KR+ Q Q R
Sbjct: 183 YDHNHKKRFKEMKEMHGASGRDERKKREQQRQER 216
>At5g26610.1 68418.m03180 D111/G-patch domain-containing protein
contains Pfam PF01585: G-patch domain
Length = 301
Score = 28.3 bits (60), Expect = 5.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 265 YTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQAR 366
Y H HK+ K E H + E++KR+ Q Q R
Sbjct: 183 YDHNHKKRFKEMKEMHGASGRDERKKREQQRQER 216
>At4g11720.1 68417.m01870 hypothetical protein
Length = 658
Score = 28.3 bits (60), Expect = 5.9
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Frame = +1
Query: 232 HSSRHKREC*RYTHRHKQN----EK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTR 390
H + H+R R+ H H Q+ +K ER ++H Q +V ++ + R+R +
Sbjct: 580 HHNHHRRTHQRHKHHHGQDDDVLQKMMLERDHSDSHYYHQLHRVHKDSKQKQRRRAK 636
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 28.3 bits (60), Expect = 5.9
Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Frame = +1
Query: 220 TRTRHSSRHKREC*RYTHRHKQNEK*RHER-HEHNTHKEKQKRKVQTQARPQHRQRT 387
+R+R S RH+ + + + E+ +R + HK+K++ KV+ +A P+ QRT
Sbjct: 128 SRSR-SERHRSQEREKSLEIEPKERETKDRDRDRRRHKDKKEDKVEPEADPERDQRT 183
>At5g16780.1 68418.m01965 SART-1 family protein contains Pfam
domain, PF03343: SART-1 family
Length = 820
Score = 27.9 bits (59), Expect = 7.8
Identities = 15/82 (18%), Positives = 38/82 (46%)
Frame = +1
Query: 148 RNHNNYTLSHKKTAYQGRPVPRNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTH 327
++ + + + ++ Y+G PV R R K + R + K ++ + +H
Sbjct: 5 KSKSRHEIREERADYEGSPV-----REHRDGRRKEKDHRSKDKEKDYDREKIRDKDHRRD 59
Query: 328 KEKQKRKVQTQARPQHRQRTRG 393
KEK++ + +++ ++ +RG
Sbjct: 60 KEKERDRKRSRDEDTEKEISRG 81
>At1g48760.2 68414.m05457 delta-adaptin, putative similar to
SP|O14617 Adapter-related protein complex 3 delta 1
subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 869
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/44 (25%), Positives = 26/44 (59%)
Frame = +1
Query: 274 RHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTRGPRAA 405
+ ++ E R E H+++ K+K+K+K + + +H+ R + A+
Sbjct: 814 QQEKEESSRIENHQNSEKKKKKKKKKKGEGSSKHKSRRQNEVAS 857
>At1g48760.1 68414.m05456 delta-adaptin, putative similar to
SP|O14617 Adapter-related protein complex 3 delta 1
subunit (Delta-adaptin 3) {Homo sapiens}; contains Pfam
profile: PF01602 Adaptin N terminal region
Length = 869
Score = 27.9 bits (59), Expect = 7.8
Identities = 11/44 (25%), Positives = 26/44 (59%)
Frame = +1
Query: 274 RHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTRGPRAA 405
+ ++ E R E H+++ K+K+K+K + + +H+ R + A+
Sbjct: 814 QQEKEESSRIENHQNSEKKKKKKKKKKGEGSSKHKSRRQNEVAS 857
>At1g20920.1 68414.m02619 DEAD box RNA helicase, putative similar to
RNA helicase [Rattus norvegicus] GI:897915; contains
Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271:
Helicase conserved C-terminal domain
Length = 1166
Score = 27.9 bits (59), Expect = 7.8
Identities = 16/74 (21%), Positives = 32/74 (43%)
Frame = +1
Query: 211 RNCTRTRHSSRHKREC*RYTHRHKQNEK*RHERHEHNTHKEKQKRKVQTQARPQHRQRTR 390
R+ R R RE R + ++ ++ R ER + +EK + + + + + ++R +
Sbjct: 111 RDKRRVNEKERGHREHERDRGKDRKRDREREERKDKEREREKDRERREREREEREKERVK 170
Query: 391 GPRAAPALLGLRDR 432
G RDR
Sbjct: 171 ERERREREDGERDR 184
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,969,535
Number of Sequences: 28952
Number of extensions: 183592
Number of successful extensions: 888
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 864
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1702303248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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