Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00039
(423 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465... 63 1e-10
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086... 38 0.003
12_01_0152 - 1168928-1169377 28 3.6
11_01_0155 - 1287003-1287452 28 3.6
11_01_0474 - 3666236-3668050 27 6.2
12_02_0172 - 14891923-14892102,14892894-14892980 27 8.2
04_04_0623 + 26669284-26669421,26670906-26671564,26671948-266721... 27 8.2
01_01_1219 + 9858375-9858483,9859184-9859506 27 8.2
>02_03_0340 +
17946133-17946136,17946207-17946342,17946428-17946584,
17947330-17947458
Length = 141
Score = 62.9 bits (146), Expect = 1e-10
Identities = 35/76 (46%), Positives = 43/76 (56%)
Frame = +3
Query: 18 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 197
M ++K ELR K+ + LRVAKVTGG +KLSKI+VVR +IARV V
Sbjct: 1 MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60
Query: 198 YHQKMKVNLRNHYKNK 245
QK + LR YK K
Sbjct: 61 ISQKQRAALREAYKKK 76
Score = 40.7 bits (91), Expect = 5e-04
Identities = 28/91 (30%), Positives = 44/91 (48%), Gaps = 18/91 (19%)
Frame = +2
Query: 167 KKSYRTCLHCVSPEDEGQS*KPLQKQEIQALDLRAKKTRAMRKALTKH------------ 310
+ S L +S + + +K+ + LDLR KKTRA+R+ LTKH
Sbjct: 51 RTSIARVLTVISQKQRAALREAYKKKSLLPLDLRPKKTRAIRRRLTKHQLCYTCIRLLTF 110
Query: 311 ------EAKIKTRKEIRKKSLFPPRVYAVKA 385
+ +KT +E +++ FP R YA+KA
Sbjct: 111 SMVAISQLSLKTEREKKREKYFPMRKYAIKA 141
>06_03_1515 -
30707600-30707613,30708093-30708167,30708596-30708647,
30708751-30708831,30709145-30709219,30709870-30709977,
30710026-30710032,30710133-30710268,30710361-30710685
Length = 290
Score = 38.3 bits (85), Expect = 0.003
Identities = 23/62 (37%), Positives = 32/62 (51%)
Frame = +3
Query: 6 VTVKMGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIAR 185
VTV M ++K LR ++ + LRVA+VTGG +KLS I+ VR A+
Sbjct: 104 VTVAMARIKVDVLRGRNKAELQAQLKDLKAELSVLRVARVTGGAPNKLSNIK-VRTALRE 162
Query: 186 VY 191
Y
Sbjct: 163 AY 164
Score = 33.1 bits (72), Expect = 0.095
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +2
Query: 236 QKQEIQALDLRAKKTRAMRKALTKHEAKI 322
+K+ + LDLR KKT A+R+ LTKH+ +
Sbjct: 167 KKKSLLPLDLRPKKTCAIRRRLTKHQGML 195
>12_01_0152 - 1168928-1169377
Length = 149
Score = 27.9 bits (59), Expect = 3.6
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 120 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 209
+V GG K S+I +R+AIA+ + Y+QK
Sbjct: 74 RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101
>11_01_0155 - 1287003-1287452
Length = 149
Score = 27.9 bits (59), Expect = 3.6
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +3
Query: 120 KVTGGVASKLSKIRVVRKAIARVYIVYHQK 209
+V GG K S+I +R+AIA+ + Y+QK
Sbjct: 74 RVRGG--GKTSQIYAIRQAIAKALVAYYQK 101
>11_01_0474 - 3666236-3668050
Length = 604
Score = 27.1 bits (57), Expect = 6.2
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 220 ILETTTKTRNTSFRFKSQEDPC 285
+L+TT KT + F +K+Q PC
Sbjct: 428 MLDTTNKTLPSVFAYKNQSSPC 449
>12_02_0172 - 14891923-14892102,14892894-14892980
Length = 88
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/49 (28%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Frame = +3
Query: 114 VAKVTGGVASKLSKIRVVRKAIARVY--IVYHQKMKVNLRNHYKNKKYK 254
+A + GV K+S A R +V H+ +++ RNH ++KY+
Sbjct: 1 MANLQVGVTRKISDPNTKAVATDRTIRNLVCHEDLRLTCRNHLSHQKYR 49
>04_04_0623 +
26669284-26669421,26670906-26671564,26671948-26672140,
26672220-26672284,26672399-26672609,26673284-26673515,
26674463-26674521,26674651-26674680,26674761-26674850
Length = 558
Score = 26.6 bits (56), Expect = 8.2
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = -2
Query: 212 HLLVIHNVNTCDSFSYNTDLG 150
H +HN N CDS Y D G
Sbjct: 396 HYWPVHNDNKCDSIKYAVDWG 416
>01_01_1219 + 9858375-9858483,9859184-9859506
Length = 143
Score = 26.6 bits (56), Expect = 8.2
Identities = 13/45 (28%), Positives = 25/45 (55%)
Frame = +2
Query: 230 PLQKQEIQALDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPP 364
PL+ ++ ++ RAK A K L + ++ ++ +RKK +PP
Sbjct: 92 PLETKQKMIMEQRAKMKLA--KKLRQRRRRLVQKRRLRKKGRWPP 134
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,102,448
Number of Sequences: 37544
Number of extensions: 115113
Number of successful extensions: 347
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 347
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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