Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00039
         (423 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)         72   2e-13
SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)                        28   3.7  
SB_17850| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.8  
SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1)                  27   4.8  
SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.4  
SB_59143| Best HMM Match : E-MAP-115 (HMM E-Value=2.2)                 27   8.5  

>SB_38468| Best HMM Match : Ribosomal_L29 (HMM E-Value=1.5e-23)
          Length = 131

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 39/76 (51%), Positives = 45/76 (59%)
 Frame = +3

Query: 24  KVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIVYH 203
           KVK  ELR K                + LRVAKVTGG ASKLSKI+VVRK++ARV  V  
Sbjct: 11  KVKAHELRGKKKDELLKQLDELKTELSQLRVAKVTGGAASKLSKIKVVRKSVARVLTVVS 70

Query: 204 QKMKVNLRNHYKNKKY 251
           Q  + NLR  Y+ KKY
Sbjct: 71  QTQRDNLRKFYRKKKY 86



 Score = 52.0 bits (119), Expect = 2e-07
 Identities = 32/72 (44%), Positives = 41/72 (56%)
 Frame = +2

Query: 167 KKSYRTCLHCVSPEDEGQS*KPLQKQEIQALDLRAKKTRAMRKALTKHEAKIKTRKEIRK 346
           +KS    L  VS        K  +K++   LDLR K TRAMR++LTK EA  KT K+ +K
Sbjct: 59  RKSVARVLTVVSQTQRDNLRKFYRKKKYLPLDLRPKLTRAMRRSLTKKEASSKTLKQQKK 118

Query: 347 KSLFPPRVYAVK 382
            + F  R YAVK
Sbjct: 119 LAHFSLRKYAVK 130


>SB_5012| Best HMM Match : 7tm_3 (HMM E-Value=0)
          Length = 726

 Score = 27.9 bits (59), Expect = 3.7
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -1

Query: 369 TLGGKRDFFLISFLVLIFASCLVRALRIARVFLALKSKACI 247
           TL G R F       L++ S LV+  RIAR+F   KS + I
Sbjct: 511 TLCGIRRFGTGISFCLLYTSLLVKTNRIARIFSGTKSPSFI 551


>SB_17850| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 69

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 1/50 (2%)
 Frame = +2

Query: 206 EDEGQS*KPLQKQEIQALDLRAKKTRAMRKALTKHEAK-IKTRKEIRKKS 352
           E E +  K  +K+E  A   R +KT   ++ALT+ ++K   +  E  KKS
Sbjct: 16  ESEEEEEKDEEKEEKPATGQRKRKTSTQKQALTRKKSKQSDSEDEDEKKS 65


>SB_13108| Best HMM Match : PRRSV_2b (HMM E-Value=6.1)
          Length = 311

 Score = 27.5 bits (58), Expect = 4.8
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = +2

Query: 236 QKQEIQALDLRAKKTR-AMRKALTKHEAKIKTRKEIRKKSLFPPRVYA 376
           + +++   DL  K T  +M  +  KH AK+  R E++  S  PP V A
Sbjct: 104 ENEKLWLSDLVEKSTPCSMDNSRQKHIAKLLLRSEMKGNSELPPHVQA 151


>SB_35177| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1293

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 212 EGQS*KPLQKQEIQALDLRAKKTRAMRKALTKHEAKIKTRK 334
           E  S K ++KQ + +  + AKK    R++L K  +K+K+ K
Sbjct: 649 ESASIKHVEKQGLNSEKIVAKKKVESRESLDKKRSKVKSSK 689


>SB_52560| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1263

 Score = 27.1 bits (57), Expect = 6.4
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +1

Query: 241  TRNTSFRFKSQEDPCYAQGSY*TRSKDQDEERD 339
            +R   F   S  DP Y  G Y     D+DEE D
Sbjct: 1202 SRWREFNVTSGSDPDYGNGDYDYDENDEDEEGD 1234


>SB_59143| Best HMM Match : E-MAP-115 (HMM E-Value=2.2)
          Length = 371

 Score = 26.6 bits (56), Expect = 8.5
 Identities = 14/54 (25%), Positives = 28/54 (51%)
 Frame = +2

Query: 203 PEDEGQS*KPLQKQEIQALDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPP 364
           PE+  +  K LQK  ++ +D   +  + +RK L   + + + R+   ++S  PP
Sbjct: 54  PEESSEQEKALQKSRVEYVDSLGRSRKCLRKDLP--DLQKRDRELNPRRSTSPP 105


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,665,010
Number of Sequences: 59808
Number of extensions: 144837
Number of successful extensions: 535
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 801830705
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)