Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00039
         (423 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014298-771|AAF46058.2|  123|Drosophila melanogaster CG4111-PA,...    98   5e-21
AE014298-770|AAN09148.1|  123|Drosophila melanogaster CG4111-PB,...    98   5e-21
AY118364-1|AAM48393.1|  123|Drosophila melanogaster RE09547p pro...    97   9e-21
BT030434-1|ABO52854.1|  492|Drosophila melanogaster IP18315p pro...    31   0.84 

>AE014298-771|AAF46058.2|  123|Drosophila melanogaster CG4111-PA,
           isoform A protein.
          Length = 123

 Score = 97.9 bits (233), Expect = 5e-21
 Identities = 52/79 (65%), Positives = 54/79 (68%)
 Frame = +3

Query: 18  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 197
           M KVKCSELR KD                +LRVAKVTGG  SKLSKIRVVRKAIARVYIV
Sbjct: 1   MVKVKCSELRIKDKKELTKQLDELKNELLSLRVAKVTGGAPSKLSKIRVVRKAIARVYIV 60

Query: 198 YHQKMKVNLRNHYKNKKYK 254
            HQK K NLR  +KNKKYK
Sbjct: 61  MHQKQKENLRKVFKNKKYK 79



 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 30/53 (56%), Positives = 40/53 (75%)
 Frame = +2

Query: 227 KPLQKQEIQALDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 385
           K  + ++ + LDLR KKTRA+RKAL+  +A  KT KEIRK+S+FP R +AVKA
Sbjct: 71  KVFKNKKYKPLDLRKKKTRAIRKALSPRDANRKTLKEIRKRSVFPQRKFAVKA 123


>AE014298-770|AAN09148.1|  123|Drosophila melanogaster CG4111-PB,
           isoform B protein.
          Length = 123

 Score = 97.9 bits (233), Expect = 5e-21
 Identities = 52/79 (65%), Positives = 54/79 (68%)
 Frame = +3

Query: 18  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 197
           M KVKCSELR KD                +LRVAKVTGG  SKLSKIRVVRKAIARVYIV
Sbjct: 1   MVKVKCSELRIKDKKELTKQLDELKNELLSLRVAKVTGGAPSKLSKIRVVRKAIARVYIV 60

Query: 198 YHQKMKVNLRNHYKNKKYK 254
            HQK K NLR  +KNKKYK
Sbjct: 61  MHQKQKENLRKVFKNKKYK 79



 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 30/53 (56%), Positives = 40/53 (75%)
 Frame = +2

Query: 227 KPLQKQEIQALDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 385
           K  + ++ + LDLR KKTRA+RKAL+  +A  KT KEIRK+S+FP R +AVKA
Sbjct: 71  KVFKNKKYKPLDLRKKKTRAIRKALSPRDANRKTLKEIRKRSVFPQRKFAVKA 123


>AY118364-1|AAM48393.1|  123|Drosophila melanogaster RE09547p
           protein.
          Length = 123

 Score = 97.1 bits (231), Expect = 9e-21
 Identities = 52/79 (65%), Positives = 54/79 (68%)
 Frame = +3

Query: 18  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 197
           M KVKCSELR KD                +LRVAKVTGG  SKLSKIRVVRKAIARVYIV
Sbjct: 1   MVKVKCSELRIKDKKELTKQLDELKNELLSLRVAKVTGGSPSKLSKIRVVRKAIARVYIV 60

Query: 198 YHQKMKVNLRNHYKNKKYK 254
            HQK K NLR  +KNKKYK
Sbjct: 61  MHQKQKENLRKVFKNKKYK 79



 Score = 61.7 bits (143), Expect = 4e-10
 Identities = 30/53 (56%), Positives = 40/53 (75%)
 Frame = +2

Query: 227 KPLQKQEIQALDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 385
           K  + ++ + LDLR KKTRA+RKAL+  +A  KT KEIRK+S+FP R +AVKA
Sbjct: 71  KVFKNKKYKPLDLRKKKTRAIRKALSPRDANRKTLKEIRKRSVFPQRKFAVKA 123


>BT030434-1|ABO52854.1|  492|Drosophila melanogaster IP18315p
           protein.
          Length = 492

 Score = 30.7 bits (66), Expect = 0.84
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 391 YSSFNGIDSRWEERFLSDLFPRLDLCFV 308
           Y++F   + +W +  + D+F RL LCFV
Sbjct: 46  YTTFFDDNIQWSQMVIKDIFQRLQLCFV 73


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,750,783
Number of Sequences: 53049
Number of extensions: 204909
Number of successful extensions: 895
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 892
length of database: 24,988,368
effective HSP length: 78
effective length of database: 20,850,546
effective search space used: 1292733852
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)