Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00039
(423 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L14429-5|AAA28216.1| 123|Caenorhabditis elegans Ribosomal prote... 69 2e-12
Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical pr... 33 0.084
Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical pr... 33 0.084
X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomera... 33 0.084
AF036702-13|AAB88379.2| 648|Caenorhabditis elegans Hypothetical... 30 0.79
Z48045-11|CAM33500.1| 887|Caenorhabditis elegans Hypothetical p... 27 4.2
Z48045-10|CAA88101.2| 849|Caenorhabditis elegans Hypothetical p... 27 4.2
U23448-8|AAL27226.1| 849|Caenorhabditis elegans Dnaj domain (pr... 27 7.3
U23448-7|AAM81128.1| 868|Caenorhabditis elegans Dnaj domain (pr... 27 7.3
U23448-6|AAL27225.1| 915|Caenorhabditis elegans Dnaj domain (pr... 27 7.3
U23448-5|AAL27227.1| 912|Caenorhabditis elegans Dnaj domain (pr... 27 7.3
>L14429-5|AAA28216.1| 123|Caenorhabditis elegans Ribosomal protein,
large subunitprotein 35 protein.
Length = 123
Score = 68.5 bits (160), Expect = 2e-12
Identities = 38/79 (48%), Positives = 44/79 (55%)
Frame = +3
Query: 18 MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 197
M K+KC LR + LRV+KVTGG ASKLSKIRVVRK IAR+ V
Sbjct: 1 MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTV 60
Query: 198 YHQKMKVNLRNHYKNKKYK 254
+Q K LR Y + KYK
Sbjct: 61 INQTQKQELRKFYADHKYK 79
Score = 41.1 bits (92), Expect = 3e-04
Identities = 20/43 (46%), Positives = 28/43 (65%)
Frame = +2
Query: 257 LDLRAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 385
+DLR KKTRA+R+ LT HE +++ K+ K R +AVKA
Sbjct: 81 IDLRLKKTRAIRRRLTAHELSLRSAKQQAKSRNQAVRKFAVKA 123
>Z93385-5|CAB07639.1| 734|Caenorhabditis elegans Hypothetical
protein M01E5.5b protein.
Length = 734
Score = 33.1 bits (72), Expect = 0.084
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 233 LQKQEIQALDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 349
L+K + +A+D K+ R +RKA+TK E KIK KE K
Sbjct: 267 LKKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 306
>Z93385-4|CAB07640.1| 806|Caenorhabditis elegans Hypothetical
protein M01E5.5a protein.
Length = 806
Score = 33.1 bits (72), Expect = 0.084
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 233 LQKQEIQALDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 349
L+K + +A+D K+ R +RKA+TK E KIK KE K
Sbjct: 339 LKKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378
>X96762-1|CAA65537.1| 806|Caenorhabditis elegans DNA topoisomerase
protein.
Length = 806
Score = 33.1 bits (72), Expect = 0.084
Identities = 18/40 (45%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Frame = +2
Query: 233 LQKQEIQALDLRAKKTRAMRKALTKHE-AKIKTRKEIRKK 349
L+K + +A+D K+ R +RKA+TK E KIK KE K
Sbjct: 339 LKKCDFRAIDAYQKEQREIRKAMTKEEKLKIKEEKEAEVK 378
>AF036702-13|AAB88379.2| 648|Caenorhabditis elegans Hypothetical
protein F33D4.6b protein.
Length = 648
Score = 29.9 bits (64), Expect = 0.79
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +2
Query: 188 LHCVSPEDEGQS*KPLQKQEIQALDLRAKKTRAMRKALTKHEAKIKTRKEIRK 346
++ + E+E KP++++E +A KK R MRK+ H+ K +KEIRK
Sbjct: 374 VNILQKENEKVEEKPVEEEE-EATTEPPKKKRKMRKS---HKTSKKEKKEIRK 422
>Z48045-11|CAM33500.1| 887|Caenorhabditis elegans Hypothetical
protein C41C4.5b protein.
Length = 887
Score = 27.5 bits (58), Expect = 4.2
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 155 DPC-CKKSYRTCLHCVSPEDEGQS*KPLQKQEIQALDLRAKKTRAMRKALTKHEAKIKT 328
D C C K Y HCVS D+G + E+ LD+ KK + A + +A++ T
Sbjct: 311 DLCLCHKEYN---HCVSTRDDGIILEISPNDELNDLDI-GKKIASQLSAQQEKQAEVTT 365
>Z48045-10|CAA88101.2| 849|Caenorhabditis elegans Hypothetical
protein C41C4.5a protein.
Length = 849
Score = 27.5 bits (58), Expect = 4.2
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 155 DPC-CKKSYRTCLHCVSPEDEGQS*KPLQKQEIQALDLRAKKTRAMRKALTKHEAKIKT 328
D C C K Y HCVS D+G + E+ LD+ KK + A + +A++ T
Sbjct: 273 DLCLCHKEYN---HCVSTRDDGIILEISPNDELNDLDI-GKKIASQLSAQQEKQAEVTT 327
>U23448-8|AAL27226.1| 849|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 5, isoform b
protein.
Length = 849
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 233 LQKQEIQALDLRAKKTRAMRKALTKHEAKIKTRKEI 340
LQ++E+ + DL+ ++A+R H KTR I
Sbjct: 356 LQRKELSSADLKLNDSKAVRTKNNDHRETGKTRNTI 391
>U23448-7|AAM81128.1| 868|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 5, isoform d
protein.
Length = 868
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 233 LQKQEIQALDLRAKKTRAMRKALTKHEAKIKTRKEI 340
LQ++E+ + DL+ ++A+R H KTR I
Sbjct: 356 LQRKELSSADLKLNDSKAVRTKNNDHRETGKTRNTI 391
>U23448-6|AAL27225.1| 915|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 5, isoform a
protein.
Length = 915
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 233 LQKQEIQALDLRAKKTRAMRKALTKHEAKIKTRKEI 340
LQ++E+ + DL+ ++A+R H KTR I
Sbjct: 356 LQRKELSSADLKLNDSKAVRTKNNDHRETGKTRNTI 391
>U23448-5|AAL27227.1| 912|Caenorhabditis elegans Dnaj domain
(prokaryotic heat shockprotein) protein 5, isoform c
protein.
Length = 912
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +2
Query: 233 LQKQEIQALDLRAKKTRAMRKALTKHEAKIKTRKEI 340
LQ++E+ + DL+ ++A+R H KTR I
Sbjct: 355 LQRKELSSADLKLNDSKAVRTKNNDHRETGKTRNTI 390
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,131,439
Number of Sequences: 27780
Number of extensions: 107831
Number of successful extensions: 414
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 393
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 692685370
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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