Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00038
(530 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 78 7e-16
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 78 9e-16
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 75 9e-15
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple... 29 0.33
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.3
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2... 27 1.7
SPAC19E9.02 |fin1||serine/threonine protein kinase Fin1|Schizosa... 27 1.7
SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr 2|||Ma... 27 2.3
SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|c... 26 3.0
SPBC216.06c |swi1||replication fork protection complex subunit S... 26 4.0
SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|c... 26 4.0
SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces pomb... 26 4.0
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 5.3
SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 5.3
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 7.0
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 78.2 bits (184), Expect = 7e-16
Identities = 32/56 (57%), Positives = 49/56 (87%)
Frame = +3
Query: 87 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIA 254
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIEA+ E+++ +I ELNGKD+++LIA
Sbjct: 1 MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIA 56
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 77.8 bits (183), Expect = 9e-16
Identities = 32/56 (57%), Positives = 50/56 (89%)
Frame = +3
Query: 87 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIA 254
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIEA+ E+++ +I+ELNGK++E+LIA
Sbjct: 1 MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIA 56
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 74.5 bits (175), Expect = 9e-15
Identities = 30/56 (53%), Positives = 49/56 (87%)
Frame = +3
Query: 87 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIA 254
M+Y+AAYLL +GGK +P+A+D+E +LS+VGIE++ E+++ +I EL+GKD+++LIA
Sbjct: 1 MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIA 56
>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1522
Score = 29.5 bits (63), Expect = 0.33
Identities = 16/61 (26%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Frame = +3
Query: 84 KMRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITEL-NGKDVEQLIAPD 260
K+R + + L ++T + E+ + G+E+ G+K K ++ E NGK +++ + P
Sbjct: 1323 KVRRIKPCTIESLFNESTLRSGKAERFSENAGVESIGKKGKNLLNESGNGKKLDKGLPPK 1382
Query: 261 V 263
V
Sbjct: 1383 V 1383
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.5 bits (58), Expect = 1.3
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = -2
Query: 223 SSVITFLSFSPSASIP--TELRIFSTSAAAGVVLPPSTASKYAAT 95
SSV T LS S S+SIP + STS ++ V+P S++S +++
Sbjct: 8 SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSS 52
>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 244
Score = 27.1 bits (57), Expect = 1.7
Identities = 19/57 (33%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = -2
Query: 262 TSGAISCSTSLPLSSV-ITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKYAAT 95
T+ + T PL S +T SFS SAS T +++ +V PPST+ T
Sbjct: 27 TTDVATTVTPTPLPSANVTTTSFS-SASTETSTHSVTSTNITSIVPPPSTSHNSTTT 82
>SPAC19E9.02 |fin1||serine/threonine protein kinase
Fin1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 27.1 bits (57), Expect = 1.7
Identities = 15/45 (33%), Positives = 23/45 (51%)
Frame = -2
Query: 238 TSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKY 104
+ L + S T +S S S+PT+ + T + + V PPS S Y
Sbjct: 526 SKLSVESDETAVSASSGESVPTDSTLTDTKSKSVFVHPPSPQSLY 570
>SPBC359.04c |||DIPSY family|Schizosaccharomyces pombe|chr
2|||Manual
Length = 358
Score = 26.6 bits (56), Expect = 2.3
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = -2
Query: 259 SGAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTAS 110
S ++S S+ L S++ T S +AS+PT I S S P+T+S
Sbjct: 77 SKSLSSSSILSNSTISTSSSTPITASVPTSSSILSNSTIPTTSPVPTTSS 126
>SPAC8C9.12c |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 303
Score = 26.2 bits (55), Expect = 3.0
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 259 SGAISCSTSLPLSSVITFLSFSPSASIP 176
SGAI+ S + PL V T L S+SIP
Sbjct: 214 SGAIASSLTTPLDVVKTLLQTRGSSSIP 241
>SPBC216.06c |swi1||replication fork protection complex subunit
Swi1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 971
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/36 (27%), Positives = 20/36 (55%)
Frame = -1
Query: 266 SHVRRNKLFNILAVELSDYFLKLLTVSFDTDGAEDL 159
+H R N+ +L+V+ D + + + TDG ++L
Sbjct: 265 AHTRHNRFGTMLSVQTEDRRFTIASQNIKTDGLDEL 300
>SPAC11D3.07c |||transcription factor|Schizosaccharomyces pombe|chr
1|||Manual
Length = 603
Score = 25.8 bits (54), Expect = 4.0
Identities = 6/15 (40%), Positives = 12/15 (80%)
Frame = +1
Query: 82 KKCVTWPRIYWLCWV 126
+K +W RI+W+C++
Sbjct: 299 EKAESWKRIFWMCYI 313
>SPBC1652.01 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 386
Score = 25.8 bits (54), Expect = 4.0
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 82 KKCVTWPRIYWLCWVARPRQLPLTLRRSSAPSVSKLTVRSLRK*SLSST 228
KK + + +I W WV R +P S PS S L SLS++
Sbjct: 161 KKGIQFEKIGWGRWVLRDSTIPANSHPQSLPSNSIPKTEPLDTPSLSNS 209
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.4 bits (53), Expect = 5.3
Identities = 16/57 (28%), Positives = 30/57 (52%)
Frame = -2
Query: 265 LTSGAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKYAAT 95
LTS + + S+ SS+ + + S +++ PT + S+SA + + ST S A+
Sbjct: 75 LTSSSAASSSLTSSSSLASSSTNSTTSASPTSSSLTSSSATSSSLASSSTTSSSLAS 131
>SPBC660.08 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 395
Score = 25.4 bits (53), Expect = 5.3
Identities = 12/17 (70%), Positives = 13/17 (76%)
Frame = +3
Query: 420 TKLYKSTRRWSLFQFMF 470
TKL K TRR SLF+F F
Sbjct: 317 TKLMKYTRRKSLFRFPF 333
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.0 bits (52), Expect = 7.0
Identities = 17/51 (33%), Positives = 25/51 (49%)
Frame = -2
Query: 262 TSGAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTAS 110
TS + STS+ SS T S + AS + T++++ V PP T S
Sbjct: 647 TSTTFTSSTSISTSSSSTATSSTSFASESSSFYSNVTTSSSTVSTPPPTTS 697
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,644,478
Number of Sequences: 5004
Number of extensions: 25147
Number of successful extensions: 86
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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