Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00038
(530 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161 72 3e-13
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129 60 1e-09
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764... 59 2e-09
07_01_1001 - 8460467-8460799 56 1e-08
07_03_0321 + 16757414-16757743 56 2e-08
01_06_0098 - 26416768-26416998 31 0.44
12_02_1217 + 27082452-27083593,27085041-27085158 29 1.8
05_07_0196 + 28352320-28352522,28352679-28352808,28353774-283538... 29 1.8
11_01_0139 - 1159748-1160173,1160229-1160301,1161600-1161877 29 2.3
12_01_0140 - 1088400-1088843 29 3.1
08_02_1093 - 24271826-24273427 28 4.1
12_01_0141 - 1091579-1091983 28 5.4
10_08_0104 + 14824122-14824178,14824274-14824318,14824419-148245... 28 5.4
09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817 28 5.4
02_04_0236 - 21170753-21170794,21171089-21172220,21172332-211726... 28 5.4
01_01_1092 - 8593414-8593776,8597750-8597931,8598080-8598152 27 7.1
08_01_0152 - 1190358-1190462,1190648-1190765,1191134-1192691,119... 27 9.4
01_06_0273 + 28073759-28074387,28074885-28075428,28076240-28076401 27 9.4
>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
Length = 113
Score = 71.7 bits (168), Expect = 3e-13
Identities = 31/56 (55%), Positives = 47/56 (83%)
Frame = +3
Query: 87 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIA 254
M+ +AAYLLAVLGG T+P+A D++ IL SVG+EA+ E+L+ +++EL GKD+ ++IA
Sbjct: 1 MKLIAAYLLAVLGGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIA 56
>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
Length = 114
Score = 59.7 bits (138), Expect = 1e-09
Identities = 24/56 (42%), Positives = 42/56 (75%)
Frame = +3
Query: 87 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIA 254
M++++AYL+A L G ++P A D+ IL SVG E D K++ ++++++GKD+ +LIA
Sbjct: 1 MKFISAYLMAYLAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIA 56
>02_04_0074 -
19474786-19474812,19475174-19475400,19476362-19476496,
19478662-19479193
Length = 306
Score = 59.3 bits (137), Expect = 2e-09
Identities = 25/57 (43%), Positives = 41/57 (71%)
Frame = +3
Query: 84 KMRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIA 254
+M++++AYLLA L G P+A D+ IL SVG E D K++ ++++L GKD+ ++IA
Sbjct: 193 RMKFISAYLLATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIA 249
>07_01_1001 - 8460467-8460799
Length = 110
Score = 56.4 bits (130), Expect = 1e-08
Identities = 24/56 (42%), Positives = 38/56 (67%)
Frame = +3
Query: 87 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIA 254
MR+VAAYL+A +GG +P DV IL +VG + D +KL + ++ GKD+ +++A
Sbjct: 1 MRFVAAYLMATIGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILA 56
>07_03_0321 + 16757414-16757743
Length = 109
Score = 55.6 bits (128), Expect = 2e-08
Identities = 24/56 (42%), Positives = 38/56 (67%)
Frame = +3
Query: 87 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIA 254
MR+VAAYL+A +GG +P DV IL +VG + D +KL + ++ GKD+ +++A
Sbjct: 1 MRFVAAYLMATIGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILA 56
>01_06_0098 - 26416768-26416998
Length = 76
Score = 31.5 bits (68), Expect = 0.44
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +3
Query: 138 PAAADVEKILSSVGIEADGEKLKKVITELNGKD 236
P V KI+ +V IEAD + K ++ L GKD
Sbjct: 16 PPPPAVVKIIETVHIEADSAEFKSIVQRLTGKD 48
>12_02_1217 + 27082452-27083593,27085041-27085158
Length = 419
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +3
Query: 105 YLLAVLGGKTTPAAADVEKILSSVGIEADGEKL 203
Y+LA+ TPA +D E+ VG +ADG+ L
Sbjct: 27 YVLALSSSCNTPACSDEEEEDDEVGSDADGDDL 59
>05_07_0196 +
28352320-28352522,28352679-28352808,28353774-28353851,
28355562-28355664,28356109-28356302,28356501-28356518
Length = 241
Score = 29.5 bits (63), Expect = 1.8
Identities = 15/41 (36%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 159 KILSSVGIEAD-GEKLKKVITELNGKDVEQLIAPDVRSCRQ 278
KI+ +V +EAD + K V+ L GKD AP++ S ++
Sbjct: 182 KIIETVYVEADTADDFKSVVQRLTGKDAVAGDAPELNSAQR 222
>11_01_0139 - 1159748-1160173,1160229-1160301,1161600-1161877
Length = 258
Score = 29.1 bits (62), Expect = 2.3
Identities = 15/42 (35%), Positives = 25/42 (59%)
Frame = +3
Query: 129 KTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIA 254
KTT E +L+ + DG+K KKV+ L ++VE+L++
Sbjct: 137 KTTTEDDHEEVLLAYRSRKEDGKKRKKVVRRLGKEEVERLLS 178
Score = 27.9 bits (59), Expect = 5.4
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +3
Query: 189 DGEKLKKVITELNGKDVEQLIAPDV 263
DG+K+KKV+ L ++VE+L++ V
Sbjct: 36 DGKKMKKVVKRLGKEEVERLLSVTV 60
>12_01_0140 - 1088400-1088843
Length = 147
Score = 28.7 bits (61), Expect = 3.1
Identities = 16/44 (36%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Frame = +3
Query: 129 KTTPAAADVEKILSSVGI--EADGEKLKKVITELNGKDVEQLIA 254
KTT D E++L + + DG+K KKV+ L ++VE+L++
Sbjct: 25 KTTTTEDDHEEVLLAYRPREKEDGKKRKKVVRRLGKEEVERLLS 68
>08_02_1093 - 24271826-24273427
Length = 533
Score = 28.3 bits (60), Expect = 4.1
Identities = 16/51 (31%), Positives = 25/51 (49%)
Frame = +3
Query: 84 KMRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKD 236
+ R AA +AV G+TT AAA + SS G + ++ + L +D
Sbjct: 3 RKREAAAAAVAVADGETTTAAARADSSSSSEGGSVCDDVVRNIFARLPARD 53
>12_01_0141 - 1091579-1091983
Length = 134
Score = 27.9 bits (59), Expect = 5.4
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 183 EADGEKLKKVITELNGKDVEQLIAPDV 263
E DG+K KKV+ L ++VE+L++ V
Sbjct: 30 EEDGKKRKKVVRRLGKEEVERLLSVTV 56
>10_08_0104 +
14824122-14824178,14824274-14824318,14824419-14824536,
14825522-14825581,14825783-14825891,14825972-14826197,
14826274-14826390,14826510-14826611
Length = 277
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/31 (41%), Positives = 19/31 (61%)
Frame = +3
Query: 114 AVLGGKTTPAAADVEKILSSVGIEADGEKLK 206
A+L GK TP D+E+ L + G GE++K
Sbjct: 14 ALLRGKETPVILDLEESLRAKGDMTQGEEVK 44
>09_02_0080 - 4020020-4020047,4020160-4022044,4022079-4022817
Length = 883
Score = 27.9 bits (59), Expect = 5.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = -2
Query: 196 SPSASIPTELRIFSTSAAAGVVLPPSTASKYAA 98
+P+ IPT F T A V +PP+TA AA
Sbjct: 533 APAPPIPTPSMPFPTVPAPPVTVPPATAPSMAA 565
>02_04_0236 -
21170753-21170794,21171089-21172220,21172332-21172601,
21173043-21173305,21173406-21173492,21174149-21174326,
21174784-21174984,21175769-21176025
Length = 809
Score = 27.9 bits (59), Expect = 5.4
Identities = 18/58 (31%), Positives = 26/58 (44%)
Frame = +3
Query: 84 KMRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAP 257
K RY+ A+ GG AA I + + A G + +V LNG D ++AP
Sbjct: 151 KERYLTAFF--AYGGCNLVLAAAAAAICAYIAPAAAGSGIPEVKAYLNGVDAYSILAP 206
>01_01_1092 - 8593414-8593776,8597750-8597931,8598080-8598152
Length = 205
Score = 27.5 bits (58), Expect = 7.1
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Frame = -2
Query: 205 LSFSPSASIPTELRI--FSTSAAAGVVLPPSTAS 110
LS+SPSAS T+L I + + A V PPS++S
Sbjct: 114 LSYSPSASSITDLPIAPYPLNYAVAPVAPPSSSS 147
>08_01_0152 -
1190358-1190462,1190648-1190765,1191134-1192691,
1193338-1193530
Length = 657
Score = 27.1 bits (57), Expect = 9.4
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = +2
Query: 41 LFFRHYTFRVN*DLKNALRGRVFTGCAGWQDHASCR*R*EDPQL 172
+ HY ++V K+ GRV T A WQD + R P L
Sbjct: 501 MLINHYKYQVWEVFKDKFSGRVATYVADWQDEENVGSRDRAPGL 544
>01_06_0273 + 28073759-28074387,28074885-28075428,28076240-28076401
Length = 444
Score = 27.1 bits (57), Expect = 9.4
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Frame = +3
Query: 123 GGKTTPAAADVEKILSSVGI-EADGEKLKKVITELNGKDVEQLIAPDVRSCRQC 281
G K+ D+ I S E GEK + +E NG V++ P +RS +C
Sbjct: 250 GSKSEDEKVDLGSITESPSEGETSGEKSGRSESEENGNGVQESREPTIRSEGEC 303
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,179,263
Number of Sequences: 37544
Number of extensions: 179829
Number of successful extensions: 526
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 519
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 526
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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