Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00038
(530 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical ... 70 9e-13
U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical pr... 58 5e-09
Z70752-5|CAA94758.1| 901|Caenorhabditis elegans Hypothetical pr... 31 0.39
Z70750-16|CAA94750.1| 901|Caenorhabditis elegans Hypothetical p... 31 0.39
U53153-9|AAC69041.1| 511|Caenorhabditis elegans Hypothetical pr... 29 2.1
U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical pr... 29 2.1
Z75956-2|CAJ90493.2| 384|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z75956-1|CAB00128.2| 489|Caenorhabditis elegans Hypothetical pr... 29 2.7
AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical ... 28 4.8
Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical pr... 27 6.3
AC024202-5|AAP86609.1| 827|Caenorhabditis elegans C. elegans AP... 27 6.3
AC024202-3|AAF36038.2| 955|Caenorhabditis elegans C. elegans AP... 27 6.3
AC024202-2|AAP86608.1| 226|Caenorhabditis elegans C. elegans AP... 27 6.3
AC024882-7|AAF60924.1| 285|Caenorhabditis elegans Hypothetical ... 27 8.4
>AL132865-1|CAB60595.1| 110|Caenorhabditis elegans Hypothetical
protein Y62E10A.1 protein.
Length = 110
Score = 70.1 bits (164), Expect = 9e-13
Identities = 33/56 (58%), Positives = 42/56 (75%)
Frame = +3
Query: 87 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIA 254
MRYV+AYLLAVLGG P D++ ILS+VG++AD E K V++ L GK VE+LIA
Sbjct: 1 MRYVSAYLLAVLGGNANPKVDDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIA 56
>U97194-7|AAB52450.2| 107|Caenorhabditis elegans Hypothetical
protein C37A2.7 protein.
Length = 107
Score = 57.6 bits (133), Expect = 5e-09
Identities = 25/56 (44%), Positives = 37/56 (66%)
Frame = +3
Query: 87 MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIA 254
M+Y+ AYLLA LGG +P+A DV K+L + G++ D E V+ L GK + ++IA
Sbjct: 1 MKYLGAYLLATLGGNASPSAQDVLKVLEAGGLDCDMENANSVVDALKGKTISEVIA 56
>Z70752-5|CAA94758.1| 901|Caenorhabditis elegans Hypothetical
protein F25B3.1 protein.
Length = 901
Score = 31.5 bits (68), Expect = 0.39
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 132 TTPAAADVEKILSSVGIEADGEKLKKVITEL-NGKDVEQLI 251
+TPA+A +I + GI EK+ +ITE+ N KD+E+ +
Sbjct: 444 STPASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484
>Z70750-16|CAA94750.1| 901|Caenorhabditis elegans Hypothetical
protein F25B3.1 protein.
Length = 901
Score = 31.5 bits (68), Expect = 0.39
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +3
Query: 132 TTPAAADVEKILSSVGIEADGEKLKKVITEL-NGKDVEQLI 251
+TPA+A +I + GI EK+ +ITE+ N KD+E+ +
Sbjct: 444 STPASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484
>U53153-9|AAC69041.1| 511|Caenorhabditis elegans Hypothetical
protein T19A5.5 protein.
Length = 511
Score = 29.1 bits (62), Expect = 2.1
Identities = 12/36 (33%), Positives = 16/36 (44%)
Frame = +1
Query: 13 SC*RLFKTNVILSALHVSCQLGLKKCVTWPRIYWLC 120
+C F+ + H CQ G +CV PR W C
Sbjct: 40 ACAAFFRRVFVTHKQHFKCQTGQNQCVPDPRGRWNC 75
>U39852-1|AAK39256.2| 2314|Caenorhabditis elegans Hypothetical protein
K10C2.1 protein.
Length = 2314
Score = 29.1 bits (62), Expect = 2.1
Identities = 19/59 (32%), Positives = 32/59 (54%)
Frame = -2
Query: 247 SCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKYAAT*RIF*VLI 71
S +T+ P ++T + P +S PT + ST+ AA V+ T+S + + +F VLI
Sbjct: 2254 SVATAGPTGPILTVV---PVSSAPTSGAVSSTATAAPVITTTKTSSVLSVSFSMFIVLI 2309
>Z75956-2|CAJ90493.2| 384|Caenorhabditis elegans Hypothetical
protein R31.2b protein.
Length = 384
Score = 28.7 bits (61), Expect = 2.7
Identities = 22/88 (25%), Positives = 38/88 (43%)
Frame = +3
Query: 21 TFVQDERYSFGITRFVSIRT*KMRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEK 200
T+ R SF TRF+ +RT + Y L P +DVE++ +++ G+K
Sbjct: 64 TYSYGRRDSFNKTRFLLVRTSVEKGKETYKRVTL-----PGGSDVERLKTTIEKACKGKK 118
Query: 201 LKKVITELNGKDVEQLIAPDVRSCRQCQ 284
+ + T VE + + + CQ
Sbjct: 119 VDMIFTLPENDLVESI--DQIHRFKDCQ 144
>Z75956-1|CAB00128.2| 489|Caenorhabditis elegans Hypothetical
protein R31.2a protein.
Length = 489
Score = 28.7 bits (61), Expect = 2.7
Identities = 22/88 (25%), Positives = 38/88 (43%)
Frame = +3
Query: 21 TFVQDERYSFGITRFVSIRT*KMRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEK 200
T+ R SF TRF+ +RT + Y L P +DVE++ +++ G+K
Sbjct: 169 TYSYGRRDSFNKTRFLLVRTSVEKGKETYKRVTL-----PGGSDVERLKTTIEKACKGKK 223
Query: 201 LKKVITELNGKDVEQLIAPDVRSCRQCQ 284
+ + T VE + + + CQ
Sbjct: 224 VDMIFTLPENDLVESI--DQIHRFKDCQ 249
>AF106589-3|AAT81179.1| 511|Caenorhabditis elegans Hypothetical
protein Y44E3A.4 protein.
Length = 511
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/53 (32%), Positives = 27/53 (50%)
Frame = -2
Query: 259 SGAISCSTSLPLSSVITFLSFSPSASIPTELRIFSTSAAAGVVLPPSTASKYA 101
S S ST P+S+ + + + SIP+ S+ + + PPS+ASK A
Sbjct: 432 SSPTSISTVNPMSASMFVPATAKEISIPSNSSATSSPFKSSSIAPPSSASKPA 484
>Z71264-2|CAA95830.1| 1202|Caenorhabditis elegans Hypothetical protein
K07G5.3 protein.
Length = 1202
Score = 27.5 bits (58), Expect = 6.3
Identities = 16/26 (61%), Positives = 17/26 (65%)
Frame = +3
Query: 183 EADGEKLKKVITELNGKDVEQLIAPD 260
EA GEK V+TEL GK V LI PD
Sbjct: 978 EARGEKTGFVLTELEGKQV--LIDPD 1001
>AC024202-5|AAP86609.1| 827|Caenorhabditis elegans C. elegans APB-1
protein, isoform c protein.
Length = 827
Score = 27.5 bits (58), Expect = 6.3
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 150 DVEKILSSVGIEADGEKLKKVITELN-GKDVEQLIAPDVRSCRQ 278
+++ L+S E E +KKVI + GKDV L PDV +C Q
Sbjct: 17 ELKNELNSDKKEKKKEAVKKVIASMTVGKDVSALF-PDVVNCMQ 59
>AC024202-3|AAF36038.2| 955|Caenorhabditis elegans C. elegans APB-1
protein, isoform a protein.
Length = 955
Score = 27.5 bits (58), Expect = 6.3
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 150 DVEKILSSVGIEADGEKLKKVITELN-GKDVEQLIAPDVRSCRQ 278
+++ L+S E E +KKVI + GKDV L PDV +C Q
Sbjct: 17 ELKNELNSDKKEKKKEAVKKVIASMTVGKDVSALF-PDVVNCMQ 59
>AC024202-2|AAP86608.1| 226|Caenorhabditis elegans C. elegans APB-1
protein, isoform b protein.
Length = 226
Score = 27.5 bits (58), Expect = 6.3
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +3
Query: 150 DVEKILSSVGIEADGEKLKKVITELN-GKDVEQLIAPDVRSCRQ 278
+++ L+S E E +KKVI + GKDV L PDV +C Q
Sbjct: 17 ELKNELNSDKKEKKKEAVKKVIASMTVGKDVSALF-PDVVNCMQ 59
>AC024882-7|AAF60924.1| 285|Caenorhabditis elegans Hypothetical
protein Y9C9A.12 protein.
Length = 285
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +2
Query: 50 RHYTFRVN*DLKNALRGRVFTGCAGWQDHASC 145
+H+T R++ D+KN R + FT + SC
Sbjct: 98 KHFTIRISDDIKNKNRDQCFTRILNTLNSKSC 129
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,261,961
Number of Sequences: 27780
Number of extensions: 145306
Number of successful extensions: 427
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 425
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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