Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00037
         (386 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC15E1.03 |rpl36a||60S ribosomal protein L36/L42|Schizosacchar...    81   5e-17
SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyce...    27   1.4  
SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces...    26   2.4  
SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|...    26   2.4  
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met...    25   5.5  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    24   7.2  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    24   7.2  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    24   9.6  

>SPAC15E1.03 |rpl36a||60S ribosomal protein
           L36/L42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 106

 Score = 81.4 bits (192), Expect = 5e-17
 Identities = 38/83 (45%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
 Frame = +2

Query: 23  MVNVPKQRRTYXXXXXXXXXXXE--SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXX 196
           MVN+PK R+TY              +QYKK  +   AQG+RRYDRKQ G+GGQ+KP+F  
Sbjct: 1   MVNIPKTRKTYCPGKNCRKHTVHRVTQYKKGPDSKLAQGKRRYDRKQSGFGGQTKPVFHK 60

Query: 197 XXXXXXXIVLRLECADCKVNHRL 265
                  +VLRLEC  CK  ++L
Sbjct: 61  KAKVTKKVVLRLECVSCKYKNQL 83



 Score = 46.8 bits (106), Expect = 1e-06
 Identities = 19/27 (70%), Positives = 23/27 (85%)
 Frame = +1

Query: 253 ESQVALKRCKHFELGGDKKRKGQMIQF 333
           ++Q+ LKRCKHFELGG+KK KG  IQF
Sbjct: 80  KNQLVLKRCKHFELGGEKKTKGAAIQF 106


>SPCC330.11 |btb1||BTB/POZ domain protein Btb1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1347

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = -3

Query: 132 PWAACLSLDFLYCDSLCTLWHL 67
           P A  + L +LY D+L + WHL
Sbjct: 679 PLAVAILLHYLYTDTLLSPWHL 700



 Score = 24.6 bits (51), Expect = 5.5
 Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +3

Query: 33   YQNSAGRTAKNVNATKYTRNHSTK-SPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKP 209
            YQ S  R +   N +  + N  TK SPR  +LP+    + ++  +T       S++R+  
Sbjct: 1200 YQESKKRIS---NGSPTSWNLLTKPSPRSASLPKNSQPLSISEIMTEQKEEIESQKRRSS 1256

Query: 210  LRK 218
             RK
Sbjct: 1257 FRK 1259


>SPCC4B3.02c |||Golgi transport protein Got1 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 129

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 20/66 (30%), Positives = 31/66 (46%)
 Frame = -3

Query: 213 LVVFAFFLKMGLD*PP*PCCLRS*RLLPWAACLSLDFLYCDSLCTLWHLHFLQYVLRCFG 34
           L+VF FF+  G         LR  R+L      S+ F +   L TL+H   + + + C G
Sbjct: 40  LLVFGFFMIAGFS-KSVSFFLRKDRMLG-----SISF-FSGLLLTLFHFPIIGFFVECLG 92

Query: 33  TFTIFE 16
            F +F+
Sbjct: 93  FFNLFK 98


>SPBC28F2.11 |||INO80 complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 17/59 (28%), Positives = 27/59 (45%)
 Frame = +3

Query: 60  KNVNATKYTRNHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPLRKLCSVLS 236
           K  +A K  R H+  +     +  V        ++ V SPNP S +R+K  R+  S+ S
Sbjct: 241 KEQHAKKPKRKHTRSTVPTSNVEPVSQPQPSPDKI-VSSPNPPSAKREKKKRRKSSMSS 298


>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
           metabolism|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 811

 Score = 24.6 bits (51), Expect = 5.5
 Identities = 11/29 (37%), Positives = 18/29 (62%)
 Frame = +3

Query: 96  STKSPRKGTLPRVEDVMIVNSRVTVVSPN 182
           ST+ PR  T    E V +++ R+ V++PN
Sbjct: 191 STEQPRMHTFSLSELVPLLSERLYVINPN 219


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 10/28 (35%), Positives = 18/28 (64%)
 Frame = +3

Query: 108 PRKGTLPRVEDVMIVNSRVTVVSPNPSS 191
           P+K + P+V  +M      +VV+P+P+S
Sbjct: 620 PQKPSAPQVTRLMAPQDSSSVVTPSPTS 647


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 24.2 bits (50), Expect = 7.2
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -1

Query: 311 LFLSPPSSKCLHLFNATCDSPCNL 240
           LF++  +   +H F A  D+P NL
Sbjct: 266 LFMAESTKSLIHFFAAKSDTPVNL 289


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 23.8 bits (49), Expect = 9.6
 Identities = 8/27 (29%), Positives = 16/27 (59%)
 Frame = +3

Query: 105 SPRKGTLPRVEDVMIVNSRVTVVSPNP 185
           SP +G+LPR     ++ + +++   NP
Sbjct: 735 SPSRGSLPRRPSSALLTNPISITKSNP 761


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,467,529
Number of Sequences: 5004
Number of extensions: 27856
Number of successful extensions: 75
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 128344734
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)