Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00037
         (386 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical pr...    86   7e-18
AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal...    86   7e-18
Z73103-7|CAA97428.1|  416|Caenorhabditis elegans Hypothetical pr...    29   1.5  
AY204176-1|AAO39180.1|  409|Caenorhabditis elegans nuclear recep...    29   1.5  
Z83125-4|CAB05616.1|  376|Caenorhabditis elegans Hypothetical pr...    28   2.6  
Z22177-4|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical pr...    28   2.6  
Z83319-2|CAB05904.2|  433|Caenorhabditis elegans Hypothetical pr...    27   6.1  
AF026201-1|AAB71239.1|  113|Caenorhabditis elegans Hypothetical ...    27   6.1  
Z68882-14|CAA93109.1|  366|Caenorhabditis elegans Hypothetical p...    26   8.1  
U61952-4|AAK84529.1|  267|Caenorhabditis elegans Hypothetical pr...    26   8.1  
AF036701-1|AAB88368.2|  332|Caenorhabditis elegans Kinase, glh-b...    26   8.1  

>Z50109-2|CAA90434.1|  105|Caenorhabditis elegans Hypothetical
           protein C09H10.2 protein.
          Length = 105

 Score = 86.2 bits (204), Expect = 7e-18
 Identities = 43/82 (52%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
 Frame = +2

Query: 23  MVNVPKQRRTYXXXXXXXXXXXE-SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 199
           MVNVPK RRT+           + +QYKK KE   AQGRRRYDRKQ G+GGQ+KPIF   
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60

Query: 200 XXXXXXIVLRLECADCKVNHRL 265
                 IVLR+EC +CK   +L
Sbjct: 61  AKTTKKIVLRMECTECKHKKQL 82



 Score = 46.4 bits (105), Expect = 7e-06
 Identities = 18/27 (66%), Positives = 23/27 (85%)
 Frame = +1

Query: 253 ESQVALKRCKHFELGGDKKRKGQMIQF 333
           + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 79  KKQLPIKRCKHFELGGQKKSRGQVIQF 105


>AF304121-1|AAG50234.1|  105|Caenorhabditis elegans 60S ribosomal
           protein L44 L41 protein.
          Length = 105

 Score = 86.2 bits (204), Expect = 7e-18
 Identities = 43/82 (52%), Positives = 51/82 (62%), Gaps = 1/82 (1%)
 Frame = +2

Query: 23  MVNVPKQRRTYXXXXXXXXXXXE-SQYKKSKERHAAQGRRRYDRKQQGYGGQSKPIFXXX 199
           MVNVPK RRT+           + +QYKK KE   AQGRRRYDRKQ G+GGQ+KPIF   
Sbjct: 1   MVNVPKARRTFCDGKCRKHTNHKVTQYKKGKESKFAQGRRRYDRKQSGFGGQTKPIFRKK 60

Query: 200 XXXXXXIVLRLECADCKVNHRL 265
                 IVLR+EC +CK   +L
Sbjct: 61  AKTTKKIVLRMECTECKHKKQL 82



 Score = 46.4 bits (105), Expect = 7e-06
 Identities = 18/27 (66%), Positives = 23/27 (85%)
 Frame = +1

Query: 253 ESQVALKRCKHFELGGDKKRKGQMIQF 333
           + Q+ +KRCKHFELGG KK +GQ+IQF
Sbjct: 79  KKQLPIKRCKHFELGGQKKSRGQVIQF 105


>Z73103-7|CAA97428.1|  416|Caenorhabditis elegans Hypothetical
           protein C08F8.8 protein.
          Length = 416

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 69  NATKYTRNHSTKSPRKGTLPRVEDVMIVNSRVTVVSPN-PSSKRRQKPLRKLCSVLSVQ 242
           ++ ++  N ST     G L  V+  + +NS     S + PSS R +  +R +  +LS+Q
Sbjct: 348 SSNQFDENSSTDDRSVGELDPVQLFLALNSSTQPSSASSPSSSRPRHSIRSITELLSIQ 406


>AY204176-1|AAO39180.1|  409|Caenorhabditis elegans nuclear receptor
           NHR-67 protein.
          Length = 409

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 17/59 (28%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 69  NATKYTRNHSTKSPRKGTLPRVEDVMIVNSRVTVVSPN-PSSKRRQKPLRKLCSVLSVQ 242
           ++ ++  N ST     G L  V+  + +NS     S + PSS R +  +R +  +LS+Q
Sbjct: 341 SSNQFDENSSTDDRSVGELDPVQLFLALNSSTQPSSASSPSSSRPRHSIRSITELLSIQ 399


>Z83125-4|CAB05616.1|  376|Caenorhabditis elegans Hypothetical
           protein T15D6.5 protein.
          Length = 376

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 33  YQNSAGRTAKNVNATKYTRNHSTKSPRKGTLPRVEDVMIVNSRVTVVSPNPSSKRRQKPL 212
           Y  +AGRT    +  + +     KS R   LP++++       + +V+  P S  R+K L
Sbjct: 86  YSTTAGRTRDFGSRFRVSFADIQKSQRWLHLPKIKNPTWNRDILMIVASRPGSVSRRKVL 145

Query: 213 RK 218
           RK
Sbjct: 146 RK 147


>Z22177-4|CAA80146.1| 1232|Caenorhabditis elegans Hypothetical
           protein ZK512.5 protein.
          Length = 1232

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 274 SSMQPVIHLAICTLKTEHNFLSGFCLL 194
           ++MQ + HL +   K E N  + FCLL
Sbjct: 630 TAMQTIYHLGLLLAKRERNCAADFCLL 656


>Z83319-2|CAB05904.2|  433|Caenorhabditis elegans Hypothetical
           protein T02D1.6 protein.
          Length = 433

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 14/47 (29%), Positives = 20/47 (42%)
 Frame = -1

Query: 173 DHRNPAVYDHNVFYPGQRAFPWTFCTVIPCVLCGIYIFCSTSCAVLV 33
           +H    V+  NV+ P Q   P     V+  VLC I   C  S  + +
Sbjct: 38  NHTGGPVWVRNVYPPIQELQPKVLIVVVVFVLCFIVGVCGNSSIITI 84


>AF026201-1|AAB71239.1|  113|Caenorhabditis elegans Hypothetical
           protein D1079.1 protein.
          Length = 113

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = -1

Query: 125 QRAFPW-TFCTVIPCVLCGIYIFC--STSCAVLVRSPFLSSF 9
           QR++P+ TF   +  +LC +YI C    S +V  +  FL +F
Sbjct: 30  QRSYPFQTFLAFLDFMLCALYIHCFGLLSISVEYKIAFLYNF 71


>Z68882-14|CAA93109.1|  366|Caenorhabditis elegans Hypothetical
           protein C47E12.11 protein.
          Length = 366

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +3

Query: 36  QNSAGRTAKNVNATKYTRNHSTKS 107
           + SAG TAK+ N TK  ++  TKS
Sbjct: 66  RQSAGSTAKSKNKTKSEKSKKTKS 89


>U61952-4|AAK84529.1|  267|Caenorhabditis elegans Hypothetical
           protein F42A9.7 protein.
          Length = 267

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/25 (44%), Positives = 19/25 (76%)
 Frame = +3

Query: 39  NSAGRTAKNVNATKYTRNHSTKSPR 113
           + +GR++K+ N+TK T + S+KS R
Sbjct: 67  SKSGRSSKSSNSTKTTGSKSSKSSR 91


>AF036701-1|AAB88368.2|  332|Caenorhabditis elegans Kinase,
           glh-binding protein 2 protein.
          Length = 332

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -3

Query: 114 SLDFLYCDSLCTLWHLHFLQYVLR 43
           +L FL   SLC + HLH L ++ R
Sbjct: 131 TLSFLVYQSLCAIKHLHNLGFIHR 154


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,432,983
Number of Sequences: 27780
Number of extensions: 169207
Number of successful extensions: 552
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 536
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 576961812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)