Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00036
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyc...   104   4e-24
SPAC12G12.10 |||WD repeat protein, human WDR21 family|Schizosacc...    28   0.46 
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1...    26   2.5  
SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein Ubr1|Sc...    25   5.7  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   5.7  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   5.7  
SPAC23H3.05c |swd1||COMPASS complex subunit Swd1|Schizosaccharom...    24   7.6  

>SPCC576.03c |tpx1||thioredoxin peroxidase Tpx1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 192

 Score =  104 bits (250), Expect = 4e-24
 Identities = 48/73 (65%), Positives = 58/73 (79%)
 Frame = +1

Query: 1   ETGIPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGA 180
           + G+ FRGLF+ID K  LRQITINDLPVGRSV+E LRL+ AFQF ++HGEVCPANW  G+
Sbjct: 118 DAGVAFRGLFLIDPKGVLRQITINDLPVGRSVDEALRLLDAFQFVEEHGEVCPANWHKGS 177

Query: 181 KTIKPDTKAAQEY 219
            TI  DTK  ++Y
Sbjct: 178 DTI--DTKNPEKY 188


>SPAC12G12.10 |||WD repeat protein, human WDR21
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 420

 Score = 28.3 bits (60), Expect = 0.46
 Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +1

Query: 46  QNLRQITINDLPVGRSVEET--LRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQE 216
           +NL++I +  LPVG  +++   LR V     T K+G++      P  K+   + K   E
Sbjct: 92  KNLKKINLRQLPVGTELQKIGWLREVNTIILTSKNGDILGCCLTPEDKSGVANEKYTSE 150


>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
           Prw1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 431

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = -2

Query: 182 LAPGLQLAGHTSPCLSVNW 126
           L P  +L  HT PC SV W
Sbjct: 174 LKPKYRLTKHTQPCTSVCW 192


>SPBC19C7.02 |ubr1|SPBC32F12.14|N-end-recognizing protein
           Ubr1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1958

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 16/41 (39%), Positives = 21/41 (51%)
 Frame = +3

Query: 240 TTPXQNHSFRNCIFNEYFLFVLHLLNQY*LT*CNPAAAIKS 362
           T   Q H +RN  F+EY   +  LL Q  LT  +P A + S
Sbjct: 765 TLRDQAHHYRNLSFHEYTFDLDVLLLQLTLTYGDPDAILPS 805


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +3

Query: 159 RQLEARRQDHQARHQGRPGVXXRRQLDTTPXQNHS 263
           + L+  + +H A  Q RP    ++ + TTP   H+
Sbjct: 285 KSLQQAKANHSANVQSRPKNYPQKPVQTTPEAVHA 319


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = -2

Query: 170 LQLAGHTSPCLSVNWKACTSRRVSSTDLPTGRSLIV 63
           L ++ + +P L VN   CT+  +S   +   RSL V
Sbjct: 660 LNISSYVNPSLGVNMLYCTNSYISLAKMSEIRSLNV 695


>SPAC23H3.05c |swd1||COMPASS complex subunit
           Swd1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 398

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = -2

Query: 233 LASPXYSWAALVSGLMVLAPGLQLAGHTSPCLSVNWKAC 117
           LAS   + + ++  L   +    L GHT    SV W +C
Sbjct: 39  LASGLVNGSVVIWDLSTFSVSRVLTGHTRAIQSVCWSSC 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,279,892
Number of Sequences: 5004
Number of extensions: 20731
Number of successful extensions: 62
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 62
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)