Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00036
(399 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0116 + 19901546-19901737,19901825-19901899,19902034-199021... 87 5e-18
04_03_0889 + 20568984-20569037,20569271-20569345,20569981-205700... 86 8e-18
07_03_1427 + 26495072-26495148,26495323-26495468,26495581-264957... 47 5e-06
07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080 39 0.002
01_06_0813 - 32165310-32165546,32165691-32165783,32166075-321662... 29 1.8
11_04_0291 - 15851647-15852252,15853995-15854136,15854666-158548... 27 4.1
07_01_0478 - 3605306-3605614,3605766-3605906 27 5.5
08_01_0839 + 8210084-8210341,8210499-8210582,8211345-8211461,821... 27 7.2
04_04_0461 + 25390552-25391904 27 7.2
03_05_0554 - 25551220-25551310,25551562-25551695,25552115-255522... 27 7.2
03_02_0170 + 6119667-6119912,6120032-6120169,6120311-6120421,612... 27 7.2
12_01_1057 - 10899871-10899961,10900255-10900411,10901420-109014... 26 9.5
06_03_1462 + 30330811-30330882,30331006-30331671 26 9.5
06_01_0115 - 901385-901495,902134-902163,902847-902927,903019-90... 26 9.5
04_04_1273 - 32307273-32307569,32307659-32307791,32307874-323081... 26 9.5
03_05_0276 + 22646416-22646760,22646858-22647090,22647184-226472... 26 9.5
03_01_0006 + 65675-65808,66385-66457,68290-68526,68648-68785,688... 26 9.5
>02_04_0116 +
19901546-19901737,19901825-19901899,19902034-19902115,
19902219-19902298,19903279-19903482,19903625-19903750,
19903872-19903985,19904802-19904918
Length = 329
Score = 87.0 bits (206), Expect = 5e-18
Identities = 39/74 (52%), Positives = 54/74 (72%), Gaps = 1/74 (1%)
Frame = +1
Query: 1 ETGIPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFT-DKHGEVCPANWRPG 177
+ GI RGLFIID + ++ TIN+L +GRSV+ET+R +QA Q+ D EVCPA W+PG
Sbjct: 252 DQGIALRGLFIIDKEGVIQHSTINNLAIGRSVDETMRTLQALQYVQDNPDEVCPAGWKPG 311
Query: 178 AKTIKPDTKAAQEY 219
K++KPD K ++EY
Sbjct: 312 DKSMKPDPKGSKEY 325
>04_03_0889 +
20568984-20569037,20569271-20569345,20569981-20570088,
20572066-20572179,20572393-20572509
Length = 155
Score = 86.2 bits (204), Expect = 8e-18
Identities = 39/72 (54%), Positives = 54/72 (75%), Gaps = 1/72 (1%)
Frame = +1
Query: 7 GIPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKH-GEVCPANWRPGAK 183
GI RGLFIID + ++ TIN+L +GRSV+ETLR +QA Q+ ++ EVCPA W+PG K
Sbjct: 80 GIALRGLFIIDKEGVIQHSTINNLAIGRSVDETLRTLQALQYVQENPDEVCPAGWKPGEK 139
Query: 184 TIKPDTKAAQEY 219
++KPD K ++EY
Sbjct: 140 SMKPDPKDSKEY 151
>07_03_1427 +
26495072-26495148,26495323-26495468,26495581-26495729,
26495829-26496224
Length = 255
Score = 47.2 bits (107), Expect = 5e-06
Identities = 20/62 (32%), Positives = 33/62 (53%)
Frame = +1
Query: 10 IPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTI 189
+P R L I+ + ++ + VGR+++E +R V A Q KH P NW+PG + +
Sbjct: 160 LPSRALHIVGPDKKVKLSFLYPACVGRNMDEVVRAVDALQTAAKHAVATPVNWKPGERVV 219
Query: 190 KP 195
P
Sbjct: 220 IP 221
>07_03_1428 + 26498201-26498318,26498422-26498570,26498685-26499080
Length = 220
Score = 38.7 bits (86), Expect = 0.002
Identities = 18/69 (26%), Positives = 32/69 (46%)
Frame = +1
Query: 10 IPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTI 189
+P R L I+ + ++ + GR++ E LR A +H P NW+PG + +
Sbjct: 125 LPNRALHIVGPDKKVKLSFLFPACTGRNMAEVLRATDALLTAARHRVATPVNWKPGERVV 184
Query: 190 KPDTKAAQE 216
P + +E
Sbjct: 185 IPPGVSDEE 193
>01_06_0813 -
32165310-32165546,32165691-32165783,32166075-32166218,
32166685-32166771,32166858-32167077,32167879-32168039
Length = 313
Score = 28.7 bits (61), Expect = 1.8
Identities = 15/33 (45%), Positives = 16/33 (48%)
Frame = -1
Query: 141 LVRELEGLHQPQGLLHRPPHGQVVDRDLPEVLL 43
+VRE E LHQ G P DLPE LL
Sbjct: 117 MVRETEKLHQQVGRYKSPDEHPFFPEDLPEPLL 149
>11_04_0291 -
15851647-15852252,15853995-15854136,15854666-15854881,
15854957-15855052,15855147-15855259,15856516-15856727,
15856842-15856939,15857066-15857186,15857291-15857508,
15857657-15857837,15857919-15858207,15858303-15858367,
15858480-15858591
Length = 822
Score = 27.5 bits (58), Expect = 4.1
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 2/29 (6%)
Frame = +1
Query: 85 GRSVEETLRLVQAFQFTDKHGEV--CPAN 165
G S+EE L LV F D HGE+ C +N
Sbjct: 559 GGSMEEMLNLVALFDKWDDHGEIGFCSSN 587
>07_01_0478 - 3605306-3605614,3605766-3605906
Length = 149
Score = 27.1 bits (57), Expect = 5.5
Identities = 10/12 (83%), Positives = 10/12 (83%)
Frame = +3
Query: 3 DGHSLPRTLHHR 38
DGH LPRTL HR
Sbjct: 7 DGHGLPRTLSHR 18
>08_01_0839 +
8210084-8210341,8210499-8210582,8211345-8211461,
8211850-8211945,8212164-8212427,8212522-8212704
Length = 333
Score = 26.6 bits (56), Expect = 7.2
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +1
Query: 136 DKHGEVCPANWRPGAKTI 189
DKHG +CP +P + T+
Sbjct: 285 DKHGHICPVTCQPVSSTV 302
>04_04_0461 + 25390552-25391904
Length = 450
Score = 26.6 bits (56), Expect = 7.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 226 DAN*TRHXTKITLFEIAYSMNTSYLYFT 309
D R+ K+TLF+ Y + YLYFT
Sbjct: 354 DGKAARNLKKLTLFKQFYLVVVGYLYFT 381
>03_05_0554 -
25551220-25551310,25551562-25551695,25552115-25552221,
25552359-25552437,25552524-25552613,25552790-25553044,
25553388-25553537,25553677-25553976
Length = 401
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -2
Query: 218 YSWAALVSGLMVLAPGLQ 165
Y W A+ G MVL PGL+
Sbjct: 371 YRWKAIKGGTMVLGPGLR 388
>03_02_0170 +
6119667-6119912,6120032-6120169,6120311-6120421,
6120621-6120828,6120938-6121019,6121239-6121347,
6122175-6122291,6122378-6122602
Length = 411
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/16 (62%), Positives = 12/16 (75%)
Frame = -2
Query: 218 YSWAALVSGLMVLAPG 171
YSW LVS L++ APG
Sbjct: 194 YSWRVLVSRLLITAPG 209
>12_01_1057 -
10899871-10899961,10900255-10900411,10901420-10901498,
10901618-10901707,10903232-10903486,10903674-10903689,
10903907-10903940,10905653-10905884
Length = 317
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = -2
Query: 218 YSWAALVSGLMVLAPGLQ 165
Y W + G MVL PGLQ
Sbjct: 287 YRWKVIKGGKMVLCPGLQ 304
>06_03_1462 + 30330811-30330882,30331006-30331671
Length = 245
Score = 26.2 bits (55), Expect = 9.5
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1
Query: 145 GEVCPANWRPG 177
GEV PA+WRPG
Sbjct: 198 GEVLPADWRPG 208
>06_01_0115 -
901385-901495,902134-902163,902847-902927,903019-903084,
903207-903284,904708-904791,904881-904970,905069-905345,
905765-905973
Length = 341
Score = 26.2 bits (55), Expect = 9.5
Identities = 17/55 (30%), Positives = 26/55 (47%)
Frame = +1
Query: 25 LFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTI 189
+ +ID + +I N V SVEE + +Q + T K G + A GA T+
Sbjct: 263 VLVIDQGTIIDRIDYNIQNVAASVEEGYKQLQKAERTQKKGGMVSACMHGGAVTL 317
>04_04_1273 -
32307273-32307569,32307659-32307791,32307874-32308105,
32308220-32308436,32308594-32308718,32309416-32310757
Length = 781
Score = 26.2 bits (55), Expect = 9.5
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 99 LHRPPHGQVVDRDLPEVLLVVDDE 28
LH P G V+ RDL +++DDE
Sbjct: 589 LHEGPDGSVIHRDLKLSNILLDDE 612
>03_05_0276 +
22646416-22646760,22646858-22647090,22647184-22647259,
22647383-22647459,22647559-22647592,22647699-22647848,
22647935-22648069,22648156-22648227
Length = 373
Score = 26.2 bits (55), Expect = 9.5
Identities = 10/19 (52%), Positives = 15/19 (78%)
Frame = -1
Query: 57 PEVLLVVDDEESSEGNARL 1
P V++VVDD+E EG+ +L
Sbjct: 81 PAVVVVVDDDEEGEGDPQL 99
>03_01_0006 +
65675-65808,66385-66457,68290-68526,68648-68785,
68871-69005,69131-69310,69495-69701,69821-69943,
70240-70359,70758-70880,72067-72171,72254-72398,
73443-73607,73669-73907,74452-74484,74977-75058,
75200-75360,75739-75951,76789-76971,77051-77220,
77375-77474
Length = 1021
Score = 26.2 bits (55), Expect = 9.5
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = -1
Query: 372 KDHSSLLQPLDYIKLINTDLTSEVQIRSIH 283
K+H + + LD++K LTSEV + IH
Sbjct: 69 KEHIPVEEVLDHLKCTREGLTSEVAQQRIH 98
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,720,291
Number of Sequences: 37544
Number of extensions: 146370
Number of successful extensions: 476
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 468
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 474
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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