Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00036
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)             113   4e-26
SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)                   113   4e-26
SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   4e-15
SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)              77   4e-15
SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)                35   0.021
SB_29511| Best HMM Match : CHGN (HMM E-Value=0.00037)                  27   5.6  
SB_11163| Best HMM Match : DUF1104 (HMM E-Value=1.7)                   27   5.6  
SB_12369| Best HMM Match : S-antigen (HMM E-Value=0.11)                27   5.6  
SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)           26   9.8  

>SB_29430| Best HMM Match : AhpC-TSA (HMM E-Value=0.00012)
          Length = 704

 Score =  113 bits (273), Expect = 4e-26
 Identities = 51/62 (82%), Positives = 55/62 (88%)
 Frame = +1

Query: 1   ETGIPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGA 180
           + G+  RGLFIIDDK  LRQITINDLPVGRSV+ETLRL+QAFQFTDKHGEVCPA WRPGA
Sbjct: 36  DQGVALRGLFIIDDKGILRQITINDLPVGRSVDETLRLIQAFQFTDKHGEVCPAGWRPGA 95

Query: 181 KT 186
            T
Sbjct: 96  DT 97


>SB_14608| Best HMM Match : AhpC-TSA (HMM E-Value=0)
          Length = 265

 Score =  113 bits (273), Expect = 4e-26
 Identities = 51/62 (82%), Positives = 55/62 (88%)
 Frame = +1

Query: 1   ETGIPFRGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGA 180
           + G+  RGLFIIDDK  LRQITINDLPVGRSV+ETLRL+QAFQFTDKHGEVCPA WRPGA
Sbjct: 167 DQGVALRGLFIIDDKGILRQITINDLPVGRSVDETLRLIQAFQFTDKHGEVCPAGWRPGA 226

Query: 181 KT 186
            T
Sbjct: 227 DT 228


>SB_35139| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 56

 Score = 77.4 bits (182), Expect = 4e-15
 Identities = 33/46 (71%), Positives = 38/46 (82%)
 Frame = +1

Query: 82  VGRSVEETLRLVQAFQFTDKHGEVCPANWRPGAKTIKPDTKAAQEY 219
           VGRSV+ETLRLVQAFQ+TDKHGEVCPA W+PG  TI PD    ++Y
Sbjct: 1   VGRSVDETLRLVQAFQYTDKHGEVCPAGWKPGKDTIIPDPTQKKKY 46


>SB_22073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 237

 Score = 77.4 bits (182), Expect = 4e-15
 Identities = 36/41 (87%), Positives = 39/41 (95%)
 Frame = +1

Query: 22  GLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKH 144
           GLFIIDDK  LRQIT+NDLPVGRSV+ETLRLVQAFQ+TDKH
Sbjct: 135 GLFIIDDKGVLRQITMNDLPVGRSVDETLRLVQAFQYTDKH 175


>SB_33971| Best HMM Match : AhpC-TSA (HMM E-Value=2e-06)
          Length = 160

 Score = 35.1 bits (77), Expect = 0.021
 Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
 Frame = +1

Query: 7   GIPF--RGLFIIDDKQNLRQITINDLPVGRSVEETLRLVQAFQFTDKHGEVCPANWRPGA 180
           G+P   R +FII   + L+   +     GR+ +E LR++ + Q T       P +W+ G 
Sbjct: 61  GLPLTCRAVFIIGPDKKLKLSILYPATTGRNFDEILRVIDSLQLTATKKVATPVDWKLGG 120

Query: 181 K-TIKPDTKAAQE 216
              + P  K  +E
Sbjct: 121 DCMVIPSIKPEEE 133


>SB_29511| Best HMM Match : CHGN (HMM E-Value=0.00037)
          Length = 955

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 135 RELEGLHQPQGLLHRPPHGQVVDRDLPEVLLVV 37
           R L+G+HQ Q L+  P HG  + R   + L  V
Sbjct: 473 RRLKGVHQNQDLVRAPRHGVPLTRYPKQTLRAV 505


>SB_11163| Best HMM Match : DUF1104 (HMM E-Value=1.7)
          Length = 282

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -1

Query: 120 LHQPQGL---LHRPPHGQVVDRDLPEVLLVVDDEESSEG 13
           L+ P+GL   LH P  G+   +  P+ + VVDDE  SEG
Sbjct: 24  LNVPEGLKSALHIPGIGERKGQTDPDEIPVVDDEFLSEG 62


>SB_12369| Best HMM Match : S-antigen (HMM E-Value=0.11)
          Length = 1123

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
 Frame = -1

Query: 120 LHQPQGL---LHRPPHGQVVDRDLPEVLLVVDDEESSEG 13
           L+ P+GL   LH P  G+   +  P+ + VVDDE  SEG
Sbjct: 24  LNVPEGLKSALHIPGIGERKGQTDPDEIPVVDDEFLSEG 62


>SB_34154| Best HMM Match : UvrD-helicase (HMM E-Value=0.064)
          Length = 1064

 Score = 26.2 bits (55), Expect = 9.8
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
 Frame = +1

Query: 7   GIPFRGLFIIDDKQNLRQITINDLPVGR-SVEE--TLRLVQAFQFTDKHG 147
           GI   G  ++ +  N+ +ITIN+    +  ++   TL  V  F F+DKHG
Sbjct: 154 GIIDFGKRLLTEDTNIIEITINNTSTTQVKIKRFSTLEEVPEFSFSDKHG 203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,958,899
Number of Sequences: 59808
Number of extensions: 172616
Number of successful extensions: 466
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 433
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)