Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00035
         (761 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1687.03c |rfc4||DNA replication factor C complex subunit Rfc...    29   0.72 
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ...    27   2.2  
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb...    27   2.9  
SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   5.1  
SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr 3||...    26   5.1  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   8.9  
SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.9  

>SPAC1687.03c |rfc4||DNA replication factor C complex subunit
           Rfc4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 29.1 bits (62), Expect = 0.72
 Identities = 12/47 (25%), Positives = 28/47 (59%)
 Frame = -2

Query: 505 WELGMSSIDVSPGIGQSYKNLASTPFQAAKLKYFTDNGSTSLKLIKG 365
           W+LG S++D+   + +  K + S P + ++L+   + G T + +++G
Sbjct: 271 WDLGFSAVDIVTNMFRVVKTMDSIP-EFSRLEMLKEIGQTHMIILEG 316


>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 317

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = -2

Query: 472 PGIGQSYKNLASTPFQAAKLK----YFTDNGSTSLKLI 371
           PGIG +YKN+ S  F   K +    +F    S  LK+I
Sbjct: 260 PGIGHNYKNIKSAIFHIYKTEGINGFFRGYSSNMLKII 297


>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 2685

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -3

Query: 198  HNFVNGITDARIRDFREHYVSVAGGLDRDVHLED 97
            H+   G+ DA  RDFR HY+  +  L+   +L+D
Sbjct: 1448 HDTHYGVYDA-YRDFRSHYIHCSLALESPRYLDD 1480


>SPBP18G5.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 430

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/66 (25%), Positives = 31/66 (46%)
 Frame = +1

Query: 382 MMSTHYP*STSASRPGTALKPNSCMTALYPETRLLKTSLTPTRRAQANSYGQVKADFVNG 561
           + + H P S+ +S       P+S +       ++LK +   +R  QA S G V +D ++ 
Sbjct: 351 IFTNHSPSSSLSSESSFEASPSSFVDRKNRWIQMLKKADEHSRSIQARSMGYVLSDDLDN 410

Query: 562 SASLCP 579
           S +  P
Sbjct: 411 SKAFRP 416


>SPCC1672.11c |||P-type ATPase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1315

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +3

Query: 390 DPLSVKYFSFAAWNGVEAKFL 452
           DPL +K F F  W+  E  FL
Sbjct: 686 DPLDIKMFKFTHWSYSEENFL 706


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -3

Query: 690  SSHDTTTAAVVVNLESKVLYRKLVS 616
            S+H+   A V +N  SK LY+K V+
Sbjct: 1283 SNHEKQMALVAMNAPSKSLYQKFVN 1307


>SPAPB1A10.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 529

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -3

Query: 663 VVVNLESKVLYRKLVSLNPSFTSMTGLGGTEGSRPINK 550
           V+ +LESKV+ R+  S N     +  + G+E ++ ++K
Sbjct: 379 VIASLESKVVTRRTGSGNNYRVGLRNVSGSERTKSLSK 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,263,601
Number of Sequences: 5004
Number of extensions: 69747
Number of successful extensions: 202
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 195
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)