Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00035
         (761 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0133 - 14057469-14057497,14057516-14057581,14057770-140583...    31   1.0  
03_01_0065 + 529200-529438,529770-529929,530217-530299,530398-53...    30   2.3  
02_04_0654 - 24755339-24755408,24755488-24755624,24756243-247563...    29   4.0  
07_03_0190 + 14893243-14893582,14893684-14893808                       29   5.3  
03_05_0124 + 21034963-21035181,21035618-21037466,21037485-210381...    29   5.3  
03_02_0855 + 11809135-11809348,11809425-11809501,11809625-118096...    28   9.3  
01_01_0762 + 5889925-5890136,5891110-5891273,5891755-5891878,589...    28   9.3  

>12_02_0133 -
           14057469-14057497,14057516-14057581,14057770-14058363,
           14058450-14058570,14058926-14059320,14059410-14059534,
           14059646-14059876,14060012-14060484,14060587-14060693,
           14060842-14061172,14061222-14061250,14061345-14061901,
           14062170-14062255,14062344-14062406,14062646-14063001,
           14063101-14063356
          Length = 1272

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 18/50 (36%), Positives = 22/50 (44%)
 Frame = +1

Query: 406 STSASRPGTALKPNSCMTALYPETRLLKTSLTPTRRAQANSYGQVKADFV 555
           S  AS  G+ LKPN C T      RL+  SLT        S    + DF+
Sbjct: 702 SNKASTDGSKLKPNECQTVSVKTGRLVDGSLTMPDALMDKSSTVPELDFI 751


>03_01_0065 +
           529200-529438,529770-529929,530217-530299,530398-530488,
           530585-530680,531107-531220,531325-531408,531493-531648,
           531755-531829,532172-532278,532361-532544,532970-533158,
           533372-533452,533794-533925,534302-534355,534484-534809,
           534925-535030,535491-535640,535763-535909
          Length = 857

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/59 (33%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = +3

Query: 171 RQ*SRLRNCGRRWREQVHRTTPQPATQCKSSVTTPQ-ILSPIELRGFYIKISEDGLVEF 344
           +Q S+L +     R+Q+  T     T C+S+VTTPQ  L         + I+E+ L EF
Sbjct: 115 KQVSQLVHENAHMRQQLQNTPLANDTSCESNVTTPQNPLRDASNPSGLLSIAEETLTEF 173


>02_04_0654 -
           24755339-24755408,24755488-24755624,24756243-24756326,
           24756929-24756944,24758035-24758405
          Length = 225

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = -1

Query: 710 DSTPCYHLPMTRQQPLWSSIWSP 642
           D+T  +H+P  R++  WS  WSP
Sbjct: 144 DNTGDHHIPNRREEQQWSHWWSP 166


>07_03_0190 + 14893243-14893582,14893684-14893808
          Length = 154

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 11/21 (52%), Positives = 16/21 (76%)
 Frame = +2

Query: 77  STLTLIQSSRCTSRSKPPATD 139
           ST +  +++RCTSRS+PP  D
Sbjct: 82  STTSTTRTARCTSRSEPPRPD 102


>03_05_0124 +
           21034963-21035181,21035618-21037466,21037485-21038194,
           21038426-21038470,21038557-21038745
          Length = 1003

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = +1

Query: 31  SYETFYRVDANEMRSINVDPHSVFEMHIAIQAASNGHIVLSEIPNPG 171
           SYE   R+D   M+S+N    S+  + + + ++ + ++ L  +P  G
Sbjct: 472 SYEDILRIDTQHMKSMNEASGSLRYLSLVVSSSDHANLDLRTLPVSG 518


>03_02_0855 +
           11809135-11809348,11809425-11809501,11809625-11809682,
           11809753-11809840,11809910-11809979,11810171-11810728
          Length = 354

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 350 STEFYQAIFRYFDVEASEFYRGQYLGCGDG 261
           STE  Q  F  F++E+S+  +G  +  GDG
Sbjct: 221 STECLQHAFSGFEIESSQMLQGHTMHLGDG 250


>01_01_0762 +
           5889925-5890136,5891110-5891273,5891755-5891878,
           5891941-5892073,5892629-5892732,5892867-5895780,
           5895876-5895965,5896251-5896355,5896633-5896740,
           5896826-5896876
          Length = 1334

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
 Frame = +1

Query: 439 KPNSCMTALYPETRLLKTSLTPTRRAQA---NSYGQVKADFVNGSASLCPAQSRHGSKT 606
           +P  C +   PE    K    PT  AQ    N    + + FV     +CP  + H S+T
Sbjct: 744 QPQLCHSTGCPEVHFSK----PTESAQVYVPNGNSPITSSFVGKLVGICPGSTSHSSET 798


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,363,580
Number of Sequences: 37544
Number of extensions: 490897
Number of successful extensions: 1355
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1355
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2039640244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)