Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00035
(761 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC084197-42|AAU87806.2| 544|Caenorhabditis elegans Acetylcholin... 36 0.041
AY523515-1|AAR98637.1| 553|Caenorhabditis elegans acetylcholine... 35 0.073
X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic... 34 0.13
X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic... 34 0.13
U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated p... 34 0.13
AY519853-1|AAR89634.1| 545|Caenorhabditis elegans acetylcholine... 33 0.22
AF067943-10|AAC17666.3| 545|Caenorhabditis elegans Acetylcholin... 33 0.22
U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine r... 32 0.51
AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine... 32 0.51
Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical pr... 31 0.68
AC024207-2|AAL77193.1| 425|Caenorhabditis elegans Hypothetical ... 31 0.68
AC024207-1|AAL77194.1| 428|Caenorhabditis elegans Hypothetical ... 31 0.68
Z67735-2|CAA91530.2| 403|Caenorhabditis elegans Hypothetical pr... 31 0.89
AC006679-2|AAK84465.2| 425|Caenorhabditis elegans Ligand-gated ... 31 0.89
Z83120-8|CAE46678.2| 511|Caenorhabditis elegans Hypothetical pr... 31 1.2
Z83120-7|CAB51466.2| 514|Caenorhabditis elegans Hypothetical pr... 31 1.2
AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated... 31 1.2
U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated io... 30 1.6
Z81509-9|CAB04158.3| 503|Caenorhabditis elegans Hypothetical pr... 29 2.7
Z81463-12|CAB03855.3| 503|Caenorhabditis elegans Hypothetical p... 29 2.7
Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical pr... 29 2.7
AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine... 29 2.7
AC006631-5|AAF39790.3| 469|Caenorhabditis elegans Acetylcholine... 29 2.7
Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical pr... 29 3.6
Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical p... 29 3.6
Z68118-7|CAA92184.2| 573|Caenorhabditis elegans Hypothetical pr... 29 3.6
X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic acety... 29 3.6
U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine r... 29 3.6
AF187013-1|AAG35183.1| 573|Caenorhabditis elegans nicotinic ace... 29 3.6
AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl cholin... 29 3.6
Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical pr... 29 4.8
Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical pr... 29 4.8
L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte upt... 29 4.8
AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein. 29 4.8
AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical ... 29 4.8
AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical ... 29 4.8
AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical ... 29 4.8
AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical ... 29 4.8
AF045643-4|AAC02597.3| 529|Caenorhabditis elegans Ligand-gated ... 29 4.8
Z99281-29|CAH04731.2| 438|Caenorhabditis elegans Hypothetical p... 28 6.3
AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical... 28 6.3
Z79598-5|CAB01863.1| 367|Caenorhabditis elegans Hypothetical pr... 28 8.3
AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical... 28 8.3
AF038606-6|AAB92023.2| 464|Caenorhabditis elegans Hypothetical ... 28 8.3
>AC084197-42|AAU87806.2| 544|Caenorhabditis elegans Acetylcholine
receptor protein 25 protein.
Length = 544
Score = 35.5 bits (78), Expect = 0.041
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +2
Query: 680 SWEDDSMAWNPDKFNGTTNIKLRQGQI 760
SW D S+ W P+ + G T+++ R+GQ+
Sbjct: 81 SWVDYSLKWKPEDYGGVTDLRFRKGQL 107
>AY523515-1|AAR98637.1| 553|Caenorhabditis elegans acetylcholine
receptor 20 (63.9kD) alternative variant a protein.
Length = 553
Score = 34.7 bits (76), Expect = 0.073
Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = +2
Query: 560 GRLPSVPPNPVMEVKLGFKLTSF-RYNTLDSKLTTTAAVVVSWEDDSMAWNPDKFNGTTN 736
G +PS+ +EV +L N L A VV W D + W+P+KF T
Sbjct: 38 GLIPSMGKKSPIEVHFSMELYQIISVNEPQQFLMLNAWVVERWTDRLLGWDPEKFGNVTE 97
Query: 737 IKL 745
I L
Sbjct: 98 IML 100
>X98600-1|CAA67197.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 563 RLPSVPPNPVMEVKLGFKLTSF-RYNTLDSKLTTTAAVVVSWEDDSMAWNPDKFNG 727
R PS PN + +KL +L+ + +D +T + + +W D ++W+P + G
Sbjct: 42 RRPSTSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLSWDPVNYGG 97
>X98599-1|CAA67196.1| 511|Caenorhabditis elegans alpha nicotinic
acetylcholine receptorsubunit protein.
Length = 511
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 563 RLPSVPPNPVMEVKLGFKLTSF-RYNTLDSKLTTTAAVVVSWEDDSMAWNPDKFNG 727
R PS PN + +KL +L+ + +D +T + + +W D ++W+P + G
Sbjct: 42 RRPSTSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLSWDPVNYGG 97
>U88175-2|AAB42282.2| 511|Caenorhabditis elegans Uncoordinated
protein 38 protein.
Length = 511
Score = 33.9 bits (74), Expect = 0.13
Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = +2
Query: 563 RLPSVPPNPVMEVKLGFKLTSF-RYNTLDSKLTTTAAVVVSWEDDSMAWNPDKFNG 727
R PS PN + +KL +L+ + +D +T + + +W D ++W+P + G
Sbjct: 42 RRPSTSPNKPLTIKLKLRLSQIIDVHEIDQIMTCSVWLKQTWIDRKLSWDPVNYGG 97
>AY519853-1|AAR89634.1| 545|Caenorhabditis elegans acetylcholine
receptor (62.5 kD)(acr-23) protein.
Length = 545
Score = 33.1 bits (72), Expect = 0.22
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +2
Query: 560 GRLPSVPPNPVMEVKLGFKLTSF-RYNTLDSKLTTTAAVVVSWEDDSMAWNPDKFNGTTN 736
G +P V + V L +L + N L A V W D + W+P +F+ T
Sbjct: 41 GLIPKVRKGSPINVTLSLQLYQIIQVNEPQQYLLLNAWAVERWVDQMLGWDPSEFDNETE 100
Query: 737 IKLRQGQI 760
I R I
Sbjct: 101 IMARHDDI 108
>AF067943-10|AAC17666.3| 545|Caenorhabditis elegans Acetylcholine
receptor protein 23 protein.
Length = 545
Score = 33.1 bits (72), Expect = 0.22
Identities = 19/68 (27%), Positives = 27/68 (39%), Gaps = 1/68 (1%)
Frame = +2
Query: 560 GRLPSVPPNPVMEVKLGFKLTSF-RYNTLDSKLTTTAAVVVSWEDDSMAWNPDKFNGTTN 736
G +P V + V L +L + N L A V W D + W+P +F+ T
Sbjct: 41 GLIPKVRKGSPINVTLSLQLYQIIQVNEPQQYLLLNAWAVERWVDQMLGWDPSEFDNETE 100
Query: 737 IKLRQGQI 760
I R I
Sbjct: 101 IMARHDDI 108
>U28735-8|AAF99957.2| 434|Caenorhabditis elegans Acetylcholine
receptor protein 22 protein.
Length = 434
Score = 31.9 bits (69), Expect = 0.51
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 680 SWEDDSMAWNPDKFNGTTNIKLRQGQI 760
SW+DD + W+P ++NG I + + QI
Sbjct: 91 SWKDDYLTWDPKEWNGIERIIIPKSQI 117
>AY519852-1|AAR89633.1| 434|Caenorhabditis elegans acetylcholine
receptor (51.1 kD)(acr-22) protein.
Length = 434
Score = 31.9 bits (69), Expect = 0.51
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 680 SWEDDSMAWNPDKFNGTTNIKLRQGQI 760
SW+DD + W+P ++NG I + + QI
Sbjct: 91 SWKDDYLTWDPKEWNGIERIIIPKSQI 117
>Z78417-4|CAB01685.2| 531|Caenorhabditis elegans Hypothetical
protein C35C5.5 protein.
Length = 531
Score = 31.5 bits (68), Expect = 0.68
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +2
Query: 593 MEVKLGFKLTSF-RYNTLDSKLTTTAAVVVSWEDDSMAWNPDKFNGTTNIKLRQGQI 760
++VK G L + ++ LTT+ + + W D + WNP + G I + QI
Sbjct: 54 LKVKFGANLCRLIDVDEVNQVLTTSLWLEMQWYDKKLTWNPTDWGGVEYIHIPSDQI 110
>AC024207-2|AAL77193.1| 425|Caenorhabditis elegans Hypothetical
protein Y74E4A.1a protein.
Length = 425
Score = 31.5 bits (68), Expect = 0.68
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 542 KRTLLMGRLPSVPPNPVMEVK-LGFKLTSFRYNTLDSKLTTTAAVVVSWEDDSMAWNPDK 718
K LM P+V +EV+ L +T N + ++ + +SW+D + WNP++
Sbjct: 63 KSNALMMLPPTVAAGETLEVQVLDGSITEMWMNEVFKEMNINGFLKLSWKDRRLRWNPEE 122
Query: 719 F 721
+
Sbjct: 123 W 123
>AC024207-1|AAL77194.1| 428|Caenorhabditis elegans Hypothetical
protein Y74E4A.1b protein.
Length = 428
Score = 31.5 bits (68), Expect = 0.68
Identities = 16/61 (26%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +2
Query: 542 KRTLLMGRLPSVPPNPVMEVK-LGFKLTSFRYNTLDSKLTTTAAVVVSWEDDSMAWNPDK 718
K LM P+V +EV+ L +T N + ++ + +SW+D + WNP++
Sbjct: 63 KSNALMMLPPTVAAGETLEVQVLDGSITEMWMNEVFKEMNINGFLKLSWKDRRLRWNPEE 122
Query: 719 F 721
+
Sbjct: 123 W 123
>Z67735-2|CAA91530.2| 403|Caenorhabditis elegans Hypothetical
protein C15A7.1 protein.
Length = 403
Score = 31.1 bits (67), Expect = 0.89
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 3/67 (4%)
Frame = +2
Query: 554 LMGRLPSVPPNPVMEVKLGFKLTSFRYNTLDSK---LTTTAAVVVSWEDDSMAWNPDKFN 724
++G L P+ + V +G +L + +D K LT V W D+ + W+P ++
Sbjct: 41 VLGPLDGSMPSE-LPVFIGAQLKLDHISRVDEKTGFLTLALTVKFMWSDERLQWDPSHYS 99
Query: 725 GTTNIKL 745
G T +L
Sbjct: 100 GFTRTRL 106
>AC006679-2|AAK84465.2| 425|Caenorhabditis elegans Ligand-gated ion
channel protein 12 protein.
Length = 425
Score = 31.1 bits (67), Expect = 0.89
Identities = 9/27 (33%), Positives = 18/27 (66%)
Frame = +2
Query: 680 SWEDDSMAWNPDKFNGTTNIKLRQGQI 760
SW+DD + W+PD+++G I + + +
Sbjct: 84 SWKDDYLVWDPDEWDGIEKITIPKSMV 110
>Z83120-8|CAE46678.2| 511|Caenorhabditis elegans Hypothetical
protein R06A4.10b protein.
Length = 511
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 653 LTTTAAVVVSWEDDSMAWNPDKFNGTTNIKL 745
L A VV W D + W+P+KF T I L
Sbjct: 28 LMLNAWVVERWTDRLLGWDPEKFGNVTEIML 58
>Z83120-7|CAB51466.2| 514|Caenorhabditis elegans Hypothetical
protein R06A4.10a protein.
Length = 514
Score = 30.7 bits (66), Expect = 1.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +2
Query: 653 LTTTAAVVVSWEDDSMAWNPDKFNGTTNIKL 745
L A VV W D + W+P+KF T I L
Sbjct: 28 LMLNAWVVERWTDRLLGWDPEKFGNVTEIML 58
>AF016445-13|AAC69055.3| 371|Caenorhabditis elegans Ligand-gated
ion channel protein 1 protein.
Length = 371
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/59 (25%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +2
Query: 587 PVMEVKLGFKLTSF-RYNTLDSKLTTTAAVVVSWEDDSMAWNPDKFNGTTNIKLRQGQI 760
P+ E+KL + ++ K+T + W D + WNP ++ G ++I + Q I
Sbjct: 52 PITELKLTMAMLKLVDVVEVEEKVTFLFDYLAEWTDQRLKWNPLEYGGISHIYVPQRMI 110
>U42839-9|AAC69013.3| 355|Caenorhabditis elegans Ligand-gated ion
channel protein 3 protein.
Length = 355
Score = 30.3 bits (65), Expect = 1.6
Identities = 18/75 (24%), Positives = 32/75 (42%), Gaps = 1/75 (1%)
Frame = +2
Query: 539 LKRTLLMGRLPSVPPNPVMEVKLGFKLTSF-RYNTLDSKLTTTAAVVVSWEDDSMAWNPD 715
L R LL PP+ +++ +L N L+ + +V W D S++W +
Sbjct: 73 LTRHLLEKHNKCSPPDGRVDISHNIELVHIIGINELNQNMQVLVYIVQQWTDASLSWKVE 132
Query: 716 KFNGTTNIKLRQGQI 760
+F G + L + I
Sbjct: 133 EFRGIKHTWLPEHSI 147
>Z81509-9|CAB04158.3| 503|Caenorhabditis elegans Hypothetical
protein F21A3.7 protein.
Length = 503
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 683 WEDDSMAWNPDKFNGTTNIKLRQGQI 760
WED+ + WNP + G I L I
Sbjct: 12 WEDEFLKWNPSSYEGAEEIFLSSSDI 37
>Z81463-12|CAB03855.3| 503|Caenorhabditis elegans Hypothetical
protein F21A3.7 protein.
Length = 503
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = +2
Query: 683 WEDDSMAWNPDKFNGTTNIKLRQGQI 760
WED+ + WNP + G I L I
Sbjct: 12 WEDEFLKWNPSSYEGAEEIFLSSSDI 37
>Z78540-1|CAB01736.1| 409|Caenorhabditis elegans Hypothetical
protein C33G3.3 protein.
Length = 409
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 5/55 (9%)
Frame = +2
Query: 566 LPSVPPN-----PVMEVKLGFKLTSFRYNTLDSKLTTTAAVVVSWEDDSMAWNPD 715
+ S+PPN PV F L F N ++ + +SW DD + WN D
Sbjct: 47 IASIPPNYLSQQPVTINFAQFTLQHFELNEHLKDISIHGYLELSWHDDRLMWNQD 101
>AC006834-2|AAF40009.1| 562|Caenorhabditis elegans Acetylcholine
receptor protein 6 protein.
Length = 562
Score = 29.5 bits (63), Expect = 2.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = +2
Query: 644 DSKLTTTAAVVVSWEDDSMAWNPDKFNGTT 733
D +T ++ W D ++WNPD+F T
Sbjct: 49 DQVITLKGTLIHHWLDYRLSWNPDEFGNIT 78
>AC006631-5|AAF39790.3| 469|Caenorhabditis elegans Acetylcholine
receptor protein 21 protein.
Length = 469
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 1/65 (1%)
Frame = +2
Query: 569 PSVPPNPVMEVKLGFKLTSF-RYNTLDSKLTTTAAVVVSWEDDSMAWNPDKFNGTTNIKL 745
PSV + V F LT + + LTT + + + W D + W+P + T I +
Sbjct: 17 PSVHSKEPINVTFVFSLTQIIDVDERNQILTTNSWIRLHWVDYKLVWDPRLYQNVTRIHI 76
Query: 746 RQGQI 760
+I
Sbjct: 77 PSDKI 81
>Z74044-1|CAA98550.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 665 AAVVVSWEDDSMAWNPDKFNGTTNIKL 745
A ++ W D+ + WNPD + T ++L
Sbjct: 76 AWIIERWFDEFLYWNPDDYENITELRL 102
>Z74039-11|CAA98508.1| 548|Caenorhabditis elegans Hypothetical
protein T26H10.1 protein.
Length = 548
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 665 AAVVVSWEDDSMAWNPDKFNGTTNIKL 745
A ++ W D+ + WNPD + T ++L
Sbjct: 76 AWIIERWFDEFLYWNPDDYENITELRL 102
>Z68118-7|CAA92184.2| 573|Caenorhabditis elegans Hypothetical
protein R01E6.4 protein.
Length = 573
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +2
Query: 653 LTTTAAVVVSWEDDSMAWNPDKFNGTTNIKL 745
LTT + + W D + W P+K+ G + +
Sbjct: 84 LTTNLWLEMKWNDAKLTWTPEKYGGLKTLHI 114
>X86403-1|CAA60157.1| 575|Caenorhabditis elegans nicotinic
acetylcholine receptor protein.
Length = 575
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = +2
Query: 653 LTTTAAVVVSWEDDSMAWNPDKFNGTTNIKLRQGQI 760
L T + + W D +AWNP ++ +N+ + ++
Sbjct: 107 LQTNVWLTMKWNDFQLAWNPAEYGNISNLHVPSDRV 142
>U23525-1|AAK71377.1| 575|Caenorhabditis elegans Acetylcholine
receptor protein 2 protein.
Length = 575
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/36 (25%), Positives = 19/36 (52%)
Frame = +2
Query: 653 LTTTAAVVVSWEDDSMAWNPDKFNGTTNIKLRQGQI 760
L T + + W D +AWNP ++ +N+ + ++
Sbjct: 107 LQTNVWLTMKWNDFQLAWNPAEYGNISNLHVPSDRV 142
>AF187013-1|AAG35183.1| 573|Caenorhabditis elegans nicotinic
acetylcholine receptor-like subunit ACR-12 protein.
Length = 573
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = +2
Query: 653 LTTTAAVVVSWEDDSMAWNPDKFNGTTNIKL 745
LTT + + W D + W P+K+ G + +
Sbjct: 84 LTTNLWLEMKWNDAKLTWTPEKYGGLKTLHI 114
>AF077307-1|AAC98095.1| 548|Caenorhabditis elegans acetyl choline
receptor alpha subunitDES-2 protein.
Length = 548
Score = 29.1 bits (62), Expect = 3.6
Identities = 9/27 (33%), Positives = 16/27 (59%)
Frame = +2
Query: 665 AAVVVSWEDDSMAWNPDKFNGTTNIKL 745
A ++ W D+ + WNPD + T ++L
Sbjct: 76 AWIIERWFDEFLYWNPDDYENITELRL 102
>Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 572 SVPPNPVMEVKLGFKLTSFR-YNTLDSKLTTTAAVVVSWEDDSMAWNPDKFNGTT 733
+ PP+ ++ V+ +L + L +T V W D S+ W+P F G T
Sbjct: 81 NAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFGGIT 135
>Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 572 SVPPNPVMEVKLGFKLTSFR-YNTLDSKLTTTAAVVVSWEDDSMAWNPDKFNGTT 733
+ PP+ ++ V+ +L + L +T V W D S+ W+P F G T
Sbjct: 81 NAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFGGIT 135
>L23649-2|AAA27911.2| 433|Caenorhabditis elegans Coelomocyte uptake
defective protein4 protein.
Length = 433
Score = 28.7 bits (61), Expect = 4.8
Identities = 9/42 (21%), Positives = 21/42 (50%)
Frame = +2
Query: 635 NTLDSKLTTTAAVVVSWEDDSMAWNPDKFNGTTNIKLRQGQI 760
N + +T + + W D+ + W+P FN ++++ Q+
Sbjct: 87 NQREQTMTVHGHIYMRWFDEFLVWDPKDFNNIQYARVKKWQV 128
>AY611497-1|AAT42012.1| 433|Caenorhabditis elegans CUP-4 protein.
Length = 433
Score = 28.7 bits (61), Expect = 4.8
Identities = 9/42 (21%), Positives = 21/42 (50%)
Frame = +2
Query: 635 NTLDSKLTTTAAVVVSWEDDSMAWNPDKFNGTTNIKLRQGQI 760
N + +T + + W D+ + W+P FN ++++ Q+
Sbjct: 87 NQREQTMTVHGHIYMRWFDEFLVWDPKDFNNIQYARVKKWQV 128
>AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 572 SVPPNPVMEVKLGFKLTSFR-YNTLDSKLTTTAAVVVSWEDDSMAWNPDKFNGTT 733
+ PP+ ++ V+ +L + L +T V W D S+ W+P F G T
Sbjct: 81 NAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFGGIT 135
>AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 572 SVPPNPVMEVKLGFKLTSFR-YNTLDSKLTTTAAVVVSWEDDSMAWNPDKFNGTT 733
+ PP+ ++ V+ +L + L +T V W D S+ W+P F G T
Sbjct: 81 NAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFGGIT 135
>AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 572 SVPPNPVMEVKLGFKLTSFR-YNTLDSKLTTTAAVVVSWEDDSMAWNPDKFNGTT 733
+ PP+ ++ V+ +L + L +T V W D S+ W+P F G T
Sbjct: 81 NAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFGGIT 135
>AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 1/55 (1%)
Frame = +2
Query: 572 SVPPNPVMEVKLGFKLTSFR-YNTLDSKLTTTAAVVVSWEDDSMAWNPDKFNGTT 733
+ PP+ ++ V+ +L + L +T V W D S+ W+P F G T
Sbjct: 81 NAPPDGLLYVEYELELVHILGIDELKQTMTVLIYVDEHWVDPSLTWDPALFGGIT 135
>AF045643-4|AAC02597.3| 529|Caenorhabditis elegans Ligand-gated ion
channel protein 30 protein.
Length = 529
Score = 28.7 bits (61), Expect = 4.8
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 656 TTTAAVVVSWEDDSMAWNPDKFNGTTNI 739
T +A + V W DD + W P+ F G I
Sbjct: 112 TVSAYLDVHWNDDFIKWKPEIFGGIERI 139
>Z99281-29|CAH04731.2| 438|Caenorhabditis elegans Hypothetical
protein Y57G11C.49 protein.
Length = 438
Score = 28.3 bits (60), Expect = 6.3
Identities = 20/76 (26%), Positives = 36/76 (47%), Gaps = 5/76 (6%)
Frame = +2
Query: 539 LKRTLLMGRLPSVPP--NPVMEVKLGFKLTSFRYNTLDSKLTT---TAAVVVSWEDDSMA 703
LK L+ G S+ P N + + + S + TLD T + ++ W+D+ +
Sbjct: 31 LKDVLMEGYDSSIRPVINERDTLFINISINSMSFLTLDPAEETINFSGEFILQWKDEFLF 90
Query: 704 WNPDKFNGTTNIKLRQ 751
WN +N T +KL++
Sbjct: 91 WNKSDYN-ITWLKLKE 105
>AL117202-20|CAB57898.4| 1205|Caenorhabditis elegans Hypothetical
protein Y47D3A.26 protein.
Length = 1205
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/44 (34%), Positives = 27/44 (61%)
Frame = -1
Query: 509 RVGVRDVFNRRVSGYRAVIQEFGFNAVPGREAEVLHG*WVDIIE 378
R+ R V+N ++G R VI+EF + G+ +V++G + +IE
Sbjct: 500 RIVARPVYNG-ITGVRKVIEEFKHDNRNGQHDDVINGYYGTVIE 542
>Z79598-5|CAB01863.1| 367|Caenorhabditis elegans Hypothetical
protein C44H4.6 protein.
Length = 367
Score = 27.9 bits (59), Expect = 8.3
Identities = 15/54 (27%), Positives = 26/54 (48%)
Frame = -2
Query: 508 GWELGMSSIDVSPGIGQSYKNLASTPFQAAKLKYFTDNGSTSLKLIKGSTCPSL 347
G +L +S++++ + + L P++A L YF D KL G+ P L
Sbjct: 283 GRKLSLSTLELLNSLMKMDPKLRIKPYEALTLPYFDDLRDPHYKLPSGAPIPPL 336
>AL110479-15|CAB54361.2| 400|Caenorhabditis elegans Hypothetical
protein Y105C5B.16 protein.
Length = 400
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/37 (24%), Positives = 20/37 (54%)
Frame = +2
Query: 650 KLTTTAAVVVSWEDDSMAWNPDKFNGTTNIKLRQGQI 760
K++ ++ W D ++WN + TT I ++Q ++
Sbjct: 92 KISVVMEIMEYWYDARLSWNASAWQNTTMIYMKQDKV 128
>AF038606-6|AAB92023.2| 464|Caenorhabditis elegans Hypothetical
protein C04C3.2 protein.
Length = 464
Score = 27.9 bits (59), Expect = 8.3
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +2
Query: 593 MEVKLGFKLTSFRYNTLDSKLTTTAAVVVSWEDDSMAWNPDKFNGTTNI 739
M + LG LT R N + + V W D +AWNP +G T +
Sbjct: 70 MTIVLGI-LTEVRENQQVASFVISH--VQKWRDPKLAWNPADHSGLTQV 115
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,185,982
Number of Sequences: 27780
Number of extensions: 390320
Number of successful extensions: 1190
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 1112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1187
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1819579054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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