Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00034
(396 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC328.10c |rps502|rps5-2|40S ribosomal protein S5|Schizosaccha... 136 2e-33
SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces p... 136 2e-33
SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr ... 27 0.80
SPAC16E8.10c |||mitochondrial ribosomal protein subunit S7|Schiz... 27 1.4
SPBC28E12.03 |rga4||GTPase activating protein Rga4|Schizosacchar... 27 1.4
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces... 25 3.2
SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi... 25 4.3
SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor Sp... 25 5.6
SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces... 24 7.4
SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces pom... 24 9.8
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21... 24 9.8
SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces ... 24 9.8
SPBC1604.05 |pgi1||glucose-6-phosphate isomerase |Schizosaccharo... 24 9.8
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 24 9.8
SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|c... 24 9.8
>SPAC328.10c |rps502|rps5-2|40S ribosomal protein
S5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 203
Score = 136 bits (328), Expect = 2e-33
Identities = 65/86 (75%), Positives = 76/86 (88%)
Frame = +1
Query: 1 VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 180
VKHAFEII LLT +NPLQVLV A+ GPREDSTRIG AGTVRRQAVDVSPLRRVNQA+
Sbjct: 92 VKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALA 151
Query: 181 LLCTGAREAAFRNIKTIAECVADELL 258
L+ GAREAAFRN+K+I+EC+A+E++
Sbjct: 152 LITIGAREAAFRNVKSISECLAEEII 177
Score = 52.0 bits (119), Expect = 3e-08
Identities = 26/28 (92%), Positives = 26/28 (92%)
Frame = +3
Query: 252 IINAAKGLSNSNAIKKKDELERVAKSNR 335
IINAAKG SNS AIKKKDELERVAKSNR
Sbjct: 176 IINAAKGSSNSYAIKKKDELERVAKSNR 203
>SPAC8C9.08 |rps5||40S ribosomal protein S5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 203
Score = 136 bits (328), Expect = 2e-33
Identities = 65/86 (75%), Positives = 76/86 (88%)
Frame = +1
Query: 1 VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 180
VKHAFEII LLT +NPLQVLV A+ GPREDSTRIG AGTVRRQAVDVSPLRRVNQA+
Sbjct: 92 VKHAFEIIALLTDQNPLQVLVDAVAACGPREDSTRIGSAGTVRRQAVDVSPLRRVNQALA 151
Query: 181 LLCTGAREAAFRNIKTIAECVADELL 258
L+ GAREAAFRN+K+I+EC+A+E++
Sbjct: 152 LITIGAREAAFRNVKSISECLAEEII 177
Score = 52.0 bits (119), Expect = 3e-08
Identities = 26/28 (92%), Positives = 26/28 (92%)
Frame = +3
Query: 252 IINAAKGLSNSNAIKKKDELERVAKSNR 335
IINAAKG SNS AIKKKDELERVAKSNR
Sbjct: 176 IINAAKGSSNSYAIKKKDELERVAKSNR 203
>SPBC2G5.03 |||ATP binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 335
Score = 27.5 bits (58), Expect = 0.80
Identities = 17/51 (33%), Positives = 28/51 (54%)
Frame = +1
Query: 10 AFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRR 162
+ +I HL+TG N + T ++N R D R+ R+ + Q+ D SP +R
Sbjct: 159 SLDIHHLVTGHNADDIAETILMNL-LRGDVARLPRSTEITTQS-DSSPTKR 207
>SPAC16E8.10c |||mitochondrial ribosomal protein subunit
S7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 259
Score = 26.6 bits (56), Expect = 1.4
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = +1
Query: 1 VKHAFEIIHLLTGENPLQVLVTAIINSGP 87
V A II TGENP+ VL AI P
Sbjct: 146 VATALSIIQKETGENPIDVLKQAIAEISP 174
>SPBC28E12.03 |rga4||GTPase activating protein
Rga4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 933
Score = 26.6 bits (56), Expect = 1.4
Identities = 12/39 (30%), Positives = 21/39 (53%)
Frame = +2
Query: 80 LDPVKIRLGSVVRVQFVVKPLMFHPCAESTKQSGFCAQV 196
++PV R SVV V +P+ +H +S ++G Q+
Sbjct: 273 IEPVSSRQSSVVNNNSVQQPVAYHAFVQSPTENGTLPQL 311
>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1009
Score = 25.4 bits (53), Expect = 3.2
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 274 YLTPTPSKRRTSWSVLLNPT 333
Y PTPS +R S S++ NP+
Sbjct: 348 YQRPTPSGKRVSLSLVANPS 367
>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
Urb1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1568
Score = 25.0 bits (52), Expect = 4.3
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 229 IAECVADELLMQLRVYLTPTPSKRRTSWSVLLN 327
+ +C ADE ++ L ++ P R+ W++LLN
Sbjct: 951 LTDC-ADEQILLLSSFVNFVPLFRKVIWNLLLN 982
>SPAC1F7.01c |spt6|SPAC694.07c|transcription elongation factor
Spt6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1365
Score = 24.6 bits (51), Expect = 5.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 16 EIIHLLTGENPLQVLVTAIINSGPREDSTR 105
EI +LTGENP ++ AI+ R + R
Sbjct: 1034 EIFLMLTGENPEELQADAIVPVNVRRVTNR 1063
>SPAC6F12.02 |rst2||transcription factor Rst2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 567
Score = 24.2 bits (50), Expect = 7.4
Identities = 9/25 (36%), Positives = 16/25 (64%)
Frame = +1
Query: 262 QLRVYLTPTPSKRRTSWSVLLNPTV 336
Q +++ P P +RR S + L NP++
Sbjct: 124 QQKIHRNPQPRRRRRSTTALPNPSL 148
>SPBC29B5.04c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 605
Score = 23.8 bits (49), Expect = 9.8
Identities = 10/35 (28%), Positives = 18/35 (51%)
Frame = -3
Query: 328 DLATRSSSSFFLMALELDKPLAALIIHLQHTLRLF 224
D+ +S F+ + E D + I+H +T R+F
Sbjct: 487 DVDNEQASEFYQLEKEPDTVPSTFILHRYYTYRIF 521
>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 23.8 bits (49), Expect = 9.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 79 SGPREDSTRIGRAGTVRRQAVDVSPL 156
SG + GRA + R+AVD SPL
Sbjct: 7 SGRANELRTPGRANSSSREAVDSSPL 32
>SPBC1703.02 |rsc9||RSC complex subunit Rsc9|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 780
Score = 23.8 bits (49), Expect = 9.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = -1
Query: 132 TTNCTRTTDPSRIFTGSRVDNGSHEYLQR 46
+TN TT PS F VD+G +Y+ R
Sbjct: 197 STNFASTTFPSVPFHPLPVDSGLQKYIDR 225
>SPBC1604.05 |pgi1||glucose-6-phosphate isomerase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 550
Score = 23.8 bits (49), Expect = 9.8
Identities = 11/25 (44%), Positives = 15/25 (60%)
Frame = -3
Query: 187 TKARLLG*LGARVKHQRLDDELYPH 113
T+A +LG A VK + DE+ PH
Sbjct: 438 TEALMLGKTPAEVKAEGTPDEIVPH 462
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 23.8 bits (49), Expect = 9.8
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 156 APSQPSNLAFVHRCT 200
A S PSN+AF+ CT
Sbjct: 469 ASSSPSNIAFLEYCT 483
>SPAC890.06 |||nucleoporin Nup157/170|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1315
Score = 23.8 bits (49), Expect = 9.8
Identities = 8/31 (25%), Positives = 16/31 (51%)
Frame = -1
Query: 147 NINGLTTNCTRTTDPSRIFTGSRVDNGSHEY 55
++ G+ NC +++ RIF D +E+
Sbjct: 178 SVQGINVNCIVSSEDGRIFFSGNKDPNLYEF 208
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,540,400
Number of Sequences: 5004
Number of extensions: 27505
Number of successful extensions: 69
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 64
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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