Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00034
(396 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0) 169 7e-43
SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74) 28 2.4
SB_31734| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.2
SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089) 27 4.2
SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20) 27 5.5
SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0) 27 7.3
SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_7477| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.3
SB_52418| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 9.6
>SB_55686| Best HMM Match : Ribosomal_S7 (HMM E-Value=0)
Length = 272
Score = 169 bits (411), Expect = 7e-43
Identities = 79/86 (91%), Positives = 85/86 (98%)
Frame = +1
Query: 1 VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 180
+KH+FEIIHLLTGENPLQVLV AIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW
Sbjct: 161 IKHSFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 220
Query: 181 LLCTGAREAAFRNIKTIAECVADELL 258
LLCTGARE+AFRNIK+IAEC+ADEL+
Sbjct: 221 LLCTGARESAFRNIKSIAECLADELI 246
Score = 51.2 bits (117), Expect = 3e-07
Identities = 25/28 (89%), Positives = 26/28 (92%)
Frame = +3
Query: 252 IINAAKGLSNSNAIKKKDELERVAKSNR 335
+INAAKG SNS AIKKKDELERVAKSNR
Sbjct: 245 LINAAKGSSNSYAIKKKDELERVAKSNR 272
>SB_41261| Best HMM Match : Metallothio_11 (HMM E-Value=0.74)
Length = 328
Score = 28.3 bits (60), Expect = 2.4
Identities = 12/30 (40%), Positives = 14/30 (46%)
Frame = -1
Query: 246 CNTLCDCFNISECSLTCTCAQKPDCLVDSA 157
C C C + C CTC Q C+V SA
Sbjct: 226 CCVTCRCSVCTCCPCDCTCLQCAPCIVFSA 255
>SB_31734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 399
Score = 27.5 bits (58), Expect = 4.2
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = +1
Query: 214 RNIKTIAECVADELLMQLRVYLTPTPSK 297
R +KT C DEL QL+ Y TP ++
Sbjct: 303 RKLKTRVPCHPDELKPQLQTYTTPRDTR 330
>SB_46098| Best HMM Match : RnaseH (HMM E-Value=0.089)
Length = 822
Score = 27.5 bits (58), Expect = 4.2
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 178 WLLCTGAREAAFRNIKTIAECVADELLMQLRVYLT 282
W+ +G +A+ I +A C A E + QLR +++
Sbjct: 395 WIWSSGTLKASPHRIAALASCPAPETVTQLRSFIS 429
>SB_45915| Best HMM Match : CRAM_rpt (HMM E-Value=9.1e-20)
Length = 359
Score = 27.1 bits (57), Expect = 5.5
Identities = 9/25 (36%), Positives = 13/25 (52%)
Frame = -1
Query: 246 CNTLCDCFNISECSLTCTCAQKPDC 172
C + +C + SEC T CA +C
Sbjct: 103 CESTTECESTSECESTSECASTTEC 127
>SB_6686| Best HMM Match : Kazal_1 (HMM E-Value=0)
Length = 2411
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/44 (29%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -1
Query: 246 CNTLCDCFNISECSLTCTCAQKPDC--LVDSAQG*NINGLTTNC 121
C C + ++ +LTCTC ++ +C D G + N T C
Sbjct: 271 CEHRAKCISNTDGTLTCTCRKEENCPGRADYVCGSDGNSYFTEC 314
>SB_56940| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1981
Score = 26.6 bits (56), Expect = 7.3
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = +1
Query: 229 IAECVADELLMQLRVYLTPTPSKRRTSWSVLLNPTVKI 342
+ +CV ++L ++ TP SK SW + NP +I
Sbjct: 1615 LTQCVQEDLYPPMQCS-TPDASKSEASWKLSRNPMAEI 1651
>SB_44878| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1338
Score = 26.6 bits (56), Expect = 7.3
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = -2
Query: 200 RAPVHKSQIAWLTRRKGETSTA*RRTVPARPILVESSRGPELI 72
R P +IA R+ T A ++T P+RP ++ +G L+
Sbjct: 461 RRPTSSGKIAPPPRQTSPTKQATKKTTPSRPPPTQTKKGNRLM 503
>SB_7477| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 99
Score = 26.6 bits (56), Expect = 7.3
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Frame = +1
Query: 178 WL-LCTG--AREAAFRNIKTIAECVADELLMQLRVYLTPTPSKRRTSWSVLL 324
W+ LC+ E+ +RN + + + LL+ V LT S R+ SVLL
Sbjct: 5 WIRLCSSYCTSESMYRNPQWFMDSIMSPLLLYTAVLLTVVASSRQIHLSVLL 56
>SB_52418| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 472
Score = 26.2 bits (55), Expect = 9.6
Identities = 15/48 (31%), Positives = 28/48 (58%)
Frame = +1
Query: 1 VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVD 144
V+HA +I+ ++ +NP LV+ + + P E+ I R ++R A+D
Sbjct: 369 VRHADQIVRVIPPDNPPGALVSTGLQATPSEELI-IAR---IKRYAID 412
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,792,624
Number of Sequences: 59808
Number of extensions: 229762
Number of successful extensions: 690
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 642
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 690807992
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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