Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00034
(396 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68751-1|CAA92971.1| 210|Caenorhabditis elegans Hypothetical pr... 168 1e-42
Z72503-6|CAA96594.4| 273|Caenorhabditis elegans Hypothetical pr... 30 0.52
Z79604-3|CAD36502.1| 817|Caenorhabditis elegans Hypothetical pr... 29 0.91
Z79604-2|CAB01900.1| 780|Caenorhabditis elegans Hypothetical pr... 29 0.91
AF332205-1|AAK17976.1| 817|Caenorhabditis elegans nuclear recep... 29 0.91
AF332204-1|AAK17975.1| 519|Caenorhabditis elegans nuclear recep... 29 0.91
U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical pr... 27 6.4
Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical pr... 26 8.5
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 26 8.5
>Z68751-1|CAA92971.1| 210|Caenorhabditis elegans Hypothetical
protein T05E11.1 protein.
Length = 210
Score = 168 bits (408), Expect = 1e-42
Identities = 78/86 (90%), Positives = 85/86 (98%)
Frame = +1
Query: 1 VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 180
VKHAFEII+LLTGENP+QVLV A+INSGPREDSTRIGRAGTVRRQAVDV+PLRRVNQAIW
Sbjct: 99 VKHAFEIIYLLTGENPVQVLVNAVINSGPREDSTRIGRAGTVRRQAVDVAPLRRVNQAIW 158
Query: 181 LLCTGAREAAFRNIKTIAECVADELL 258
LLCTGAREAAFRN+KTIAEC+ADEL+
Sbjct: 159 LLCTGAREAAFRNVKTIAECLADELI 184
Score = 51.2 bits (117), Expect = 3e-07
Identities = 25/28 (89%), Positives = 26/28 (92%)
Frame = +3
Query: 252 IINAAKGLSNSNAIKKKDELERVAKSNR 335
+INAAKG SNS AIKKKDELERVAKSNR
Sbjct: 183 LINAAKGSSNSYAIKKKDELERVAKSNR 210
>Z72503-6|CAA96594.4| 273|Caenorhabditis elegans Hypothetical
protein C26C6.8 protein.
Length = 273
Score = 30.3 bits (65), Expect = 0.52
Identities = 18/58 (31%), Positives = 29/58 (50%)
Frame = +2
Query: 74 STLDPVKIRLGSVVRVQFVVKPLMFHPCAESTKQSGFCAQVHVRLHSEILKQSQSVLQ 247
S D + ++ G V V + P + S QSGF HV++ EIL+Q+ V++
Sbjct: 149 SAPDDISVKDGESVTVLNISDPEWTY-IRNSDNQSGFVPSSHVKIPHEILQQASRVIK 205
>Z79604-3|CAD36502.1| 817|Caenorhabditis elegans Hypothetical
protein ZK662.3b protein.
Length = 817
Score = 29.5 bits (63), Expect = 0.91
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 216 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 106
S C+ +C C + P C+VD +NG ++N + TD
Sbjct: 493 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 531
>Z79604-2|CAB01900.1| 780|Caenorhabditis elegans Hypothetical
protein ZK662.3a protein.
Length = 780
Score = 29.5 bits (63), Expect = 0.91
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 216 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 106
S C+ +C C + P C+VD +NG ++N + TD
Sbjct: 456 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 494
>AF332205-1|AAK17976.1| 817|Caenorhabditis elegans nuclear receptor
NHR-48 protein.
Length = 817
Score = 29.5 bits (63), Expect = 0.91
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 216 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 106
S C+ +C C + P C+VD +NG ++N + TD
Sbjct: 493 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 531
>AF332204-1|AAK17975.1| 519|Caenorhabditis elegans nuclear receptor
NHR-48 protein.
Length = 519
Score = 29.5 bits (63), Expect = 0.91
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Frame = -1
Query: 216 SECSLTCTCAQKP--DCLVDSAQG*NINGLTTNCTRTTD 106
S C+ +C C + P C+VD +NG ++N + TD
Sbjct: 195 STCTCSCMCGRYPPGSCIVDEVTKDLLNGGSSNSSNATD 233
>U70852-1|AAK29815.1| 2361|Caenorhabditis elegans Hypothetical
protein F45E4.4 protein.
Length = 2361
Score = 26.6 bits (56), Expect = 6.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -1
Query: 90 TGSRVDNGSHEYLQRVFSS*QVNNFKRMFD 1
TGSR +GS + Q FS+ ++ FK FD
Sbjct: 226 TGSRHSSGSSAHSQFGFSTPSISGFKIFFD 255
>Z98877-5|CAD56616.1| 731|Caenorhabditis elegans Hypothetical
protein Y69H2.3c protein.
Length = 731
Score = 26.2 bits (55), Expect = 8.5
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 4/64 (6%)
Frame = -1
Query: 252 FICNTLCDCFNISECSLTCTCAQKPDCLVDSAQG*NINGLTTNCTRTTD----PSRIFTG 85
F+ N C N +EC T + + P LVD G + T T D PS +F G
Sbjct: 205 FLRNRQGQCVNPTECPATGSTDENPCNLVDCRTGHQCSMSTGKPTCVPDYSDTPSPLFPG 264
Query: 84 SRVD 73
+ D
Sbjct: 265 NGSD 268
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 26.2 bits (55), Expect = 8.5
Identities = 18/49 (36%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
Frame = -1
Query: 249 ICNTLCDCFNI-SECSLTCTCAQKPDCLVDSAQG*NINGLTTNCTRTTD 106
IC C I S+CS TC A P C S N +T C T D
Sbjct: 61 ICQPQCPRAEINSDCSATCVRACIPSC---SKSTGNTFACSTTCESTCD 106
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,590,769
Number of Sequences: 27780
Number of extensions: 164909
Number of successful extensions: 518
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 609015246
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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