Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00034
         (396 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identi...   146   4e-36
At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) simila...   146   6e-36
At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) simila...   146   6e-36
At5g18410.1 68418.m02166 expressed protein similar to p53 induci...    27   4.5  
At1g69490.1 68414.m07985 no apical meristem (NAM) family protein...    26   7.9  
At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein c...    26   7.9  

>At2g37270.1 68415.m04572 40S ribosomal protein S5 (RPS5A) identical
           to GP:3043428
          Length = 207

 Score =  146 bits (355), Expect = 4e-36
 Identities = 69/86 (80%), Positives = 79/86 (91%)
 Frame = +1

Query: 1   VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 180
           VKHA EIIHLL+  NP+QV++ AI+NSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+
Sbjct: 96  VKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIF 155

Query: 181 LLCTGAREAAFRNIKTIAECVADELL 258
           LL TGAREAAFRNIKTIAEC+ADEL+
Sbjct: 156 LLTTGAREAAFRNIKTIAECLADELI 181



 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 23/28 (82%), Positives = 26/28 (92%)
 Frame = +3

Query: 252 IINAAKGLSNSNAIKKKDELERVAKSNR 335
           +INAAKG SNS AIKKKDE+ERVAK+NR
Sbjct: 180 LINAAKGSSNSYAIKKKDEIERVAKANR 207


>At3g11940.2 68416.m01470 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  146 bits (353), Expect = 6e-36
 Identities = 68/86 (79%), Positives = 79/86 (91%)
 Frame = +1

Query: 1   VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 180
           VKHA EIIHLL+  NP+QV++ AI+NSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+
Sbjct: 96  VKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIF 155

Query: 181 LLCTGAREAAFRNIKTIAECVADELL 258
           L+ TGAREAAFRNIKTIAEC+ADEL+
Sbjct: 156 LITTGAREAAFRNIKTIAECLADELI 181



 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 23/28 (82%), Positives = 26/28 (92%)
 Frame = +3

Query: 252 IINAAKGLSNSNAIKKKDELERVAKSNR 335
           +INAAKG SNS AIKKKDE+ERVAK+NR
Sbjct: 180 LINAAKGSSNSYAIKKKDEIERVAKANR 207


>At3g11940.1 68416.m01469 40S ribosomal protein S5 (RPS5B) similar
           to 40S ribosomal protein S5 GB:AAC98068 GI:4056502 from
           [Arabidopsis thaliana]
          Length = 207

 Score =  146 bits (353), Expect = 6e-36
 Identities = 68/86 (79%), Positives = 79/86 (91%)
 Frame = +1

Query: 1   VKHAFEIIHLLTGENPLQVLVTAIINSGPREDSTRIGRAGTVRRQAVDVSPLRRVNQAIW 180
           VKHA EIIHLL+  NP+QV++ AI+NSGPRED+TRIG AG VRRQAVD+SPLRRVNQAI+
Sbjct: 96  VKHAMEIIHLLSDLNPIQVIIDAIVNSGPREDATRIGSAGVVRRQAVDISPLRRVNQAIF 155

Query: 181 LLCTGAREAAFRNIKTIAECVADELL 258
           L+ TGAREAAFRNIKTIAEC+ADEL+
Sbjct: 156 LITTGAREAAFRNIKTIAECLADELI 181



 Score = 49.2 bits (112), Expect = 1e-06
 Identities = 23/28 (82%), Positives = 26/28 (92%)
 Frame = +3

Query: 252 IINAAKGLSNSNAIKKKDELERVAKSNR 335
           +INAAKG SNS AIKKKDE+ERVAK+NR
Sbjct: 180 LINAAKGSSNSYAIKKKDEIERVAKANR 207


>At5g18410.1 68418.m02166 expressed protein similar to p53 inducible
           protein [Homo sapiens] GI:5616320
          Length = 1234

 Score = 27.1 bits (57), Expect = 4.5
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +2

Query: 122 QFVVKPLMFHPCAESTKQSGFCAQVHVRLHSEILKQSQSVLQMN 253
           +F ++P+ F    + TK    CA V +    +ILK S  +L  +
Sbjct: 733 KFSIQPVRFTALFKMTKVKDLCAVVELEKLIDILKHSHELLSQD 776


>At1g69490.1 68414.m07985 no apical meristem (NAM) family protein
           similar to N-term half of NAC domain protein NAM
           [Arabidopsis thaliana] GI:4325282
          Length = 268

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 12/55 (21%), Positives = 27/55 (49%)
 Frame = +1

Query: 178 WLLCTGAREAAFRNIKTIAECVADELLMQLRVYLTPTPSKRRTSWSVLLNPTVKI 342
           W+LC   ++     +    E   DE+LM+    +    ++RRT   +++  ++K+
Sbjct: 153 WVLCRIYKKRGASKLLNEQEGFMDEVLMEDETKVVVNEAERRTEEEIMMMTSMKL 207


>At1g10170.1 68414.m01147 NF-X1 type zinc finger family protein
           contains Pfam PF01422: NF-X1 type zinc finger; similar
           to transcriptional repressor NF-X1 (SP:Q12986) [Homo
           sapiens]; similar to EST gb|T21002
          Length = 1188

 Score = 26.2 bits (55), Expect = 7.9
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -1

Query: 234 CDCFNISECSLTCTCAQK 181
           CD FN SE  +  TC QK
Sbjct: 735 CDSFNESEAGMRVTCRQK 752


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,044,713
Number of Sequences: 28952
Number of extensions: 148374
Number of successful extensions: 359
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 359
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 565902384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)