Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00032
(399 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62857 Cluster: 40S ribosomal protein S28; n=137; Eukar... 78 7e-14
UniRef50_UPI0000E1F4D9 Cluster: PREDICTED: similar to ribosomal ... 73 2e-12
UniRef50_Q10421 Cluster: 40S ribosomal protein S28; n=13; Eukary... 70 2e-11
UniRef50_Q5EMS8 Cluster: 40S ribosomal protein S28-like protein;... 61 7e-09
UniRef50_Q4WGB8 Cluster: Ribosomal protein S28e; n=9; Fungi/Meta... 61 9e-09
UniRef50_Q9SR73 Cluster: 40S ribosomal protein S28-1; n=13; Magn... 56 2e-07
UniRef50_Q8TVE7 Cluster: 30S ribosomal protein S28e; n=11; cellu... 47 1e-04
UniRef50_Q57U30 Cluster: 40S ribosomal protein S33, putative; n=... 47 2e-04
UniRef50_A2VEJ7 Cluster: IP17744p; n=1; Drosophila melanogaster|... 46 2e-04
UniRef50_P54065 Cluster: 30S ribosomal protein S28e; n=27; Archa... 46 3e-04
UniRef50_Q3LVV1 Cluster: Ribosomal protein S28; n=1; Bigelowiell... 44 0.001
UniRef50_Q3V3R3 Cluster: 16 days neonate cerebellum cDNA, RIKEN ... 43 0.002
UniRef50_Q5THV0 Cluster: OTTHUMP00000028879; n=1; Homo sapiens|R... 43 0.003
UniRef50_Q980Q5 Cluster: 30S ribosomal protein S28e; n=14; Archa... 40 0.014
UniRef50_Q8SQM2 Cluster: 40S RIBOSOMAL PROTEIN S28; n=1; Encepha... 39 0.041
UniRef50_P57710 Cluster: 30S ribosomal protein S28e; n=9; Euryar... 39 0.041
UniRef50_UPI0000DB6B2B Cluster: PREDICTED: similar to CG8561-PA;... 33 2.7
UniRef50_Q4MYM8 Cluster: Putative uncharacterized protein; n=1; ... 33 2.7
UniRef50_A6LGM6 Cluster: Putative outer membrane protein, probab... 31 6.3
UniRef50_Q7QNK8 Cluster: ENSANGP00000015156; n=1; Anopheles gamb... 31 8.3
>UniRef50_P62857 Cluster: 40S ribosomal protein S28; n=137;
Eukaryota|Rep: 40S ribosomal protein S28 - Homo sapiens
(Human)
Length = 69
Score = 77.8 bits (183), Expect = 7e-14
Identities = 36/46 (78%), Positives = 41/46 (89%)
Frame = +2
Query: 59 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRD 196
+P LARV KVLGRTGSQGQCTQV+VEF+ +TSR IIRNVKGPVR+
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVEFMDDTSRSIIRNVKGPVRE 52
>UniRef50_UPI0000E1F4D9 Cluster: PREDICTED: similar to ribosomal
protein S28; n=2; Catarrhini|Rep: PREDICTED: similar to
ribosomal protein S28 - Pan troglodytes
Length = 356
Score = 73.3 bits (172), Expect = 2e-12
Identities = 34/44 (77%), Positives = 39/44 (88%)
Frame = +2
Query: 59 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPV 190
+P LARV KVLGRTGSQGQCTQV+V+F+ +TSR IIRNVKGPV
Sbjct: 7 QPIKLARVTKVLGRTGSQGQCTQVRVKFMDDTSRSIIRNVKGPV 50
>UniRef50_Q10421 Cluster: 40S ribosomal protein S28; n=13;
Eukaryota|Rep: 40S ribosomal protein S28 -
Schizosaccharomyces pombe (Fission yeast)
Length = 68
Score = 69.7 bits (163), Expect = 2e-11
Identities = 32/46 (69%), Positives = 40/46 (86%)
Frame = +2
Query: 62 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDE 199
P LA+V+KVLGRTGS+G TQV+VEF+ +TSR IIRNVKGPVR++
Sbjct: 7 PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVRED 52
>UniRef50_Q5EMS8 Cluster: 40S ribosomal protein S28-like protein;
n=2; Sordariomycetes|Rep: 40S ribosomal protein S28-like
protein - Magnaporthe grisea (Rice blast fungus)
(Pyricularia grisea)
Length = 85
Score = 61.3 bits (142), Expect = 7e-09
Identities = 31/59 (52%), Positives = 41/59 (69%)
Frame = +2
Query: 59 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDETSSLFLNLNVKL 235
+P L +V +VLGRTGS+G TQV+VEF+ + SR IIRNVKGP + + L+L KL
Sbjct: 6 QPVKLVKVTRVLGRTGSRGGVTQVRVEFMDDQSRSIIRNVKGPGNERLLDIPLSLAHKL 64
>UniRef50_Q4WGB8 Cluster: Ribosomal protein S28e; n=9; Fungi/Metazoa
group|Rep: Ribosomal protein S28e - Aspergillus
fumigatus (Sartorya fumigata)
Length = 56
Score = 60.9 bits (141), Expect = 9e-09
Identities = 28/43 (65%), Positives = 35/43 (81%)
Frame = +2
Query: 59 KPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGP 187
+P L +V +VLGRTGS+G TQV+VEF+ +TSR IIRNVKGP
Sbjct: 6 QPVKLVKVTRVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGP 48
>UniRef50_Q9SR73 Cluster: 40S ribosomal protein S28-1; n=13;
Magnoliophyta|Rep: 40S ribosomal protein S28-1 -
Arabidopsis thaliana (Mouse-ear cress)
Length = 64
Score = 56.4 bits (130), Expect = 2e-07
Identities = 29/48 (60%), Positives = 37/48 (77%)
Frame = +2
Query: 53 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRD 196
MD A VVKV+GRTGS+GQ TQV+V+F ++ R I+RNVKGPVR+
Sbjct: 1 MDSQIKHAVVVKVMGRTGSRGQVTQVRVKFT-DSDRYIMRNVKGPVRE 47
>UniRef50_Q8TVE7 Cluster: 30S ribosomal protein S28e; n=11; cellular
organisms|Rep: 30S ribosomal protein S28e - Methanopyrus
kandleri
Length = 74
Score = 47.2 bits (107), Expect = 1e-04
Identities = 24/43 (55%), Positives = 30/43 (69%), Gaps = 2/43 (4%)
Frame = +2
Query: 74 ARVVKVLGRTGSQGQCTQVKVEFI--GETSRQIIRNVKGPVRD 196
A VV++LGRTG G+ TQVKV + + R I RNVKGPVR+
Sbjct: 15 AEVVEILGRTGMAGEVTQVKVRILEGPDKGRIITRNVKGPVRE 57
>UniRef50_Q57U30 Cluster: 40S ribosomal protein S33, putative; n=1;
Trypanosoma brucei|Rep: 40S ribosomal protein S33,
putative - Trypanosoma brucei
Length = 103
Score = 46.8 bits (106), Expect = 2e-04
Identities = 22/44 (50%), Positives = 31/44 (70%), Gaps = 5/44 (11%)
Frame = +2
Query: 80 VVKVLGRTGSQGQCTQVKVEFIG-----ETSRQIIRNVKGPVRD 196
++KVLGRTGS+G TQV+V + E +R I+RNVKGP ++
Sbjct: 43 IIKVLGRTGSRGNVTQVRVRLMAEEGSPEANRTIVRNVKGPCKE 86
>UniRef50_A2VEJ7 Cluster: IP17744p; n=1; Drosophila
melanogaster|Rep: IP17744p - Drosophila melanogaster
(Fruit fly)
Length = 73
Score = 46.4 bits (105), Expect = 2e-04
Identities = 19/40 (47%), Positives = 29/40 (72%)
Frame = +2
Query: 74 ARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVR 193
ARV+K+L R G++G T+V+V+ + + Q +R VKGPVR
Sbjct: 7 ARVIKILNRIGARGILTEVRVQLVDQPKMQFMRTVKGPVR 46
>UniRef50_P54065 Cluster: 30S ribosomal protein S28e; n=27;
Archaea|Rep: 30S ribosomal protein S28e - Methanococcus
jannaschii
Length = 75
Score = 46.0 bits (104), Expect = 3e-04
Identities = 22/47 (46%), Positives = 32/47 (68%), Gaps = 2/47 (4%)
Frame = +2
Query: 59 KPNVLARVVKVLGRTGSQGQCTQVKVEFIG--ETSRQIIRNVKGPVR 193
K V A V++V+GRTG G QV+ + +G +T R ++RNVKGPV+
Sbjct: 8 KEAVAAEVIEVIGRTGVTGGIIQVRCKILGGKDTGRVLVRNVKGPVK 54
>UniRef50_Q3LVV1 Cluster: Ribosomal protein S28; n=1; Bigelowiella
natans|Rep: Ribosomal protein S28 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 65
Score = 44.0 bits (99), Expect = 0.001
Identities = 19/38 (50%), Positives = 27/38 (71%)
Frame = +2
Query: 80 VVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVR 193
V K+L + G +GQ TQV+V+ I + +IRN+KGPVR
Sbjct: 13 VTKILKKVGKRGQGTQVRVKSITNIKKTLIRNIKGPVR 50
>UniRef50_Q3V3R3 Cluster: 16 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:9630014M24
product:hypothetical protein, full insert sequence; n=2;
Mus musculus|Rep: 16 days neonate cerebellum cDNA, RIKEN
full-length enriched library, clone:9630014M24
product:hypothetical protein, full insert sequence - Mus
musculus (Mouse)
Length = 148
Score = 43.2 bits (97), Expect = 0.002
Identities = 24/40 (60%), Positives = 26/40 (65%)
Frame = -1
Query: 192 RTGPFTFLMI*RLVSPMNSTFT*VHWP*EPVRPSTFTTRA 73
RTGP TF M RLVS ++ST T H P EPV PST T A
Sbjct: 87 RTGPLTFQMKERLVSFIDSTPTCAHCPCEPVLPSTLVTLA 126
>UniRef50_Q5THV0 Cluster: OTTHUMP00000028879; n=1; Homo sapiens|Rep:
OTTHUMP00000028879 - Homo sapiens (Human)
Length = 57
Score = 42.7 bits (96), Expect = 0.003
Identities = 20/37 (54%), Positives = 26/37 (70%)
Frame = +2
Query: 62 PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIR 172
P L + KVLGRT SQGQCT+V VEF+ S+++ R
Sbjct: 8 PVKLVKATKVLGRTSSQGQCTRVCVEFMVSQSKRLRR 44
>UniRef50_Q980Q5 Cluster: 30S ribosomal protein S28e; n=14;
Archaea|Rep: 30S ribosomal protein S28e - Sulfolobus
solfataricus
Length = 83
Score = 40.3 bits (90), Expect = 0.014
Identities = 20/42 (47%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Frame = +2
Query: 74 ARVVKVLGRTGSQGQCTQVKVEFI--GETSRQIIRNVKGPVR 193
A V+++L RTG G+ TQV+V + + R + RNVKGPVR
Sbjct: 21 AEVIQILDRTGVTGEVTQVRVRVLEGRDKGRILTRNVKGPVR 62
>UniRef50_Q8SQM2 Cluster: 40S RIBOSOMAL PROTEIN S28; n=1;
Encephalitozoon cuniculi|Rep: 40S RIBOSOMAL PROTEIN S28
- Encephalitozoon cuniculi
Length = 65
Score = 38.7 bits (86), Expect = 0.041
Identities = 21/45 (46%), Positives = 25/45 (55%)
Frame = +2
Query: 56 DKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPV 190
++ V VLGRTG G TQVK+E + R I R VKGPV
Sbjct: 3 EQQEFFGEVTHVLGRTGGSGLLTQVKMELM-HNKRTIQRAVKGPV 46
>UniRef50_P57710 Cluster: 30S ribosomal protein S28e; n=9;
Euryarchaeota|Rep: 30S ribosomal protein S28e -
Halobacterium salinarium (Halobacterium halobium)
Length = 74
Score = 38.7 bits (86), Expect = 0.041
Identities = 20/42 (47%), Positives = 27/42 (64%), Gaps = 2/42 (4%)
Frame = +2
Query: 74 ARVVKVLGRTGSQGQCTQVK--VEFIGETSRQIIRNVKGPVR 193
A V++V+G+TG G+ QVK ++ G R I RNV GPVR
Sbjct: 13 AEVIEVVGKTGMHGEAMQVKCRIQEGGNQGRIITRNVLGPVR 54
>UniRef50_UPI0000DB6B2B Cluster: PREDICTED: similar to CG8561-PA;
n=1; Apis mellifera|Rep: PREDICTED: similar to CG8561-PA
- Apis mellifera
Length = 623
Score = 32.7 bits (71), Expect = 2.7
Identities = 15/35 (42%), Positives = 23/35 (65%)
Frame = -3
Query: 157 AGLPNELDLHLSTLALRTCTAKHFHDTSKNVGFIH 53
+GL N DL+LS+ L+ TA F D +N+G++H
Sbjct: 455 SGLENLKDLNLSSNKLQKITADMFADLPQNLGYLH 489
>UniRef50_Q4MYM8 Cluster: Putative uncharacterized protein; n=1;
Theileria parva|Rep: Putative uncharacterized protein -
Theileria parva
Length = 335
Score = 32.7 bits (71), Expect = 2.7
Identities = 17/63 (26%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 29 LSSILQAKMDKPNVLARVVKVLGRTGSQGQC-TQVKVEFIGETSRQIIRNVKGPVRDETS 205
++ ++Q +D NV++ V ++G+ + T K+E+I +T N+KG V
Sbjct: 240 ITKVIQMNIDNVNVISHVGGIVGQISNSNSIPTDYKIEYILDTMLYAYINLKGTVHQFNH 299
Query: 206 SLF 214
LF
Sbjct: 300 ILF 302
>UniRef50_A6LGM6 Cluster: Putative outer membrane protein, probably
involved in nutrient binding; n=1; Parabacteroides
distasonis ATCC 8503|Rep: Putative outer membrane
protein, probably involved in nutrient binding -
Parabacteroides distasonis (strain ATCC 8503 / DSM 20701
/ NCTC11152)
Length = 605
Score = 31.5 bits (68), Expect = 6.3
Identities = 14/22 (63%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Frame = -2
Query: 125 EYTGPENLYGQALSR-HEQERW 63
+YTGPE+LYG +SR EQE W
Sbjct: 165 QYTGPEDLYGLQVSRDKEQEVW 186
>UniRef50_Q7QNK8 Cluster: ENSANGP00000015156; n=1; Anopheles gambiae
str. PEST|Rep: ENSANGP00000015156 - Anopheles gambiae
str. PEST
Length = 41
Score = 31.1 bits (67), Expect = 8.3
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 94 WPYRFSGPVYSSEGRVHWGDQPSDHQKR 177
W YR G VY +G V +PSDH +R
Sbjct: 14 WAYRIPGTVYPGKGGVPERAKPSDHPQR 41
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 369,343,554
Number of Sequences: 1657284
Number of extensions: 6359615
Number of successful extensions: 14009
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 13786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14003
length of database: 575,637,011
effective HSP length: 92
effective length of database: 423,166,883
effective search space used: 16926675320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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