Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00032
         (399 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein S28|Schizosa...    70   2e-13
SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein S28|Sc...    70   2e-13
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    26   2.5  
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom...    25   5.7  
SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase Agn2|Schizo...    24   7.6  
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    24   7.6  
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom...    24   7.6  

>SPAC25G10.06 |rps2801|rps28-1|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 68

 Score = 69.7 bits (163), Expect = 2e-13
 Identities = 32/46 (69%), Positives = 40/46 (86%)
 Frame = +2

Query: 62  PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDE 199
           P  LA+V+KVLGRTGS+G  TQV+VEF+ +TSR IIRNVKGPVR++
Sbjct: 7   PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVRED 52


>SPCC285.15c |rps2802|rps28-2, rps28|40S ribosomal protein
           S28|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 68

 Score = 69.7 bits (163), Expect = 2e-13
 Identities = 32/46 (69%), Positives = 40/46 (86%)
 Frame = +2

Query: 62  PNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDE 199
           P  LA+V+KVLGRTGS+G  TQV+VEF+ +TSR IIRNVKGPVR++
Sbjct: 7   PVKLAKVIKVLGRTGSRGGVTQVRVEFMDDTSRSIIRNVKGPVRED 52


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 25.8 bits (54), Expect = 2.5
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -3

Query: 199 LVTDGSFHVSDDLTAGLPNELDLHLSTLAL 110
           L+T+G     D+++   PN  DL LS+LAL
Sbjct: 434 LITEGVNPTLDEVSKFNPNNEDLDLSSLAL 463


>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 326

 Score = 24.6 bits (51), Expect = 5.7
 Identities = 9/38 (23%), Positives = 22/38 (57%)
 Frame = +2

Query: 47  AKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSR 160
           A +D+P  + ++V+ +  T  +  CT+VK+    + ++
Sbjct: 121 ALLDEPEKVHKLVRAVKSTLGESFCTEVKIRIAKDLNK 158


>SPBC646.06c |agn2||glucan endo-1,3-alpha-glucosidase
           Agn2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = +1

Query: 79  CRESAWPYRFSGPVYSSEGRVHWGDQPSDHQK 174
           C+ + WPY  S P   +E  V+  +  + ++K
Sbjct: 172 CKWNCWPYYTSSPTSDAEDLVYIQNSKATNKK 203


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -1

Query: 117 WP*EPVRPSTFTTRARTLGLSILACNIE 34
           WP +P    +       +G+SI+AC IE
Sbjct: 498 WPGDPTFRKSNDVCIALIGVSIIACGIE 525


>SPBC713.04c |||U3 snoRNP-associated protein
           Utp1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 854

 Score = 24.2 bits (50), Expect = 7.6
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 279 P*PNAVMLHNLSQPPSFTFRFKKSEDVS 196
           P  N V ++NL    S+TF F+  +++S
Sbjct: 32  PVGNRVSVYNLKDNTSYTFPFENHKNIS 59


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,563,938
Number of Sequences: 5004
Number of extensions: 27623
Number of successful extensions: 59
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 134126124
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)