Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00032
         (399 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_37831| Best HMM Match : MAM (HMM E-Value=0)                         28   3.2  
SB_8910| Best HMM Match : MAM (HMM E-Value=1.9)                        28   3.2  
SB_6594| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   4.3  
SB_59269| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.4  
SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)                  27   7.4  

>SB_37831| Best HMM Match : MAM (HMM E-Value=0)
          Length = 563

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 95  GRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDETSSLFL-NLNVKLGGCD 247
           G  G + Q  QV + + GET + ++  V+G   D T  + + ++ V    CD
Sbjct: 151 GNQGQRWQMAQVPINYTGETIQLLLEGVRG--SDYTGDIAVDDIVVSTNSCD 200


>SB_8910| Best HMM Match : MAM (HMM E-Value=1.9)
          Length = 89

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 95  GRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRDETSSLFL-NLNVKLGGCD 247
           G  G + Q  QV + + GET + ++  V+G   D T  + + ++ V    CD
Sbjct: 22  GNQGQRWQMAQVPINYTGETIQLLLEGVRG--SDYTGDIAVDDIVVSTNSCD 71


>SB_6594| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
 Frame = -2

Query: 113 PENLYGQALSRHEQERWVY-PFW 48
           P++L    LSRH+ ERWV+ PF+
Sbjct: 293 PDDLERIRLSRHKMERWVHMPFF 315


>SB_59269| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1008

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +2

Query: 8   GARVLIALSSILQAKMDKPNVLARVVKVLGRTGSQGQC 121
           GAR +    ++    +    VLAR  + L R G++G+C
Sbjct: 597 GARAVCVAGALSARSLSGHAVLARSARALTRLGARGRC 634


>SB_9528| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-39)
          Length = 841

 Score = 26.6 bits (56), Expect = 7.4
 Identities = 16/71 (22%), Positives = 33/71 (46%)
 Frame = +2

Query: 17  VLIALSSILQAKMDKPNVLARVVKVLGRTGSQGQCTQVKVEFIGETSRQIIRNVKGPVRD 196
           V++ L  ++ A +  P +  R+   + R     Q + +KVE + ET  ++   ++GP   
Sbjct: 641 VMLVLIELMPAVV-MPMMYTRIFLTVRRHNRLDQKSGIKVELVDETFTKLKGEIRGPPET 699

Query: 197 ETSSLFLNLNV 229
                  NL++
Sbjct: 700 PFEGGTYNLDI 710


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,780,533
Number of Sequences: 59808
Number of extensions: 210693
Number of successful extensions: 469
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 469
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 703143849
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)