Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00032
(399 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC024776-21|AAK68479.1| 65|Caenorhabditis elegans Ribosomal pr... 71 4e-13
U28929-1|AAN63410.1| 418|Caenorhabditis elegans Hypothetical pr... 29 1.6
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p... 28 2.8
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p... 28 2.8
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p... 28 2.8
Z83129-7|CAB05644.1| 256|Caenorhabditis elegans Hypothetical pr... 26 8.7
AL021508-1|CAA16431.1| 170|Caenorhabditis elegans Hypothetical ... 26 8.7
>AC024776-21|AAK68479.1| 65|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 28 protein.
Length = 65
Score = 70.5 bits (165), Expect = 4e-13
Identities = 36/49 (73%), Positives = 41/49 (83%), Gaps = 1/49 (2%)
Frame = +2
Query: 53 MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIG-ETSRQIIRNVKGPVRD 196
MDK LARV KV+GRTGSQGQCTQV+VEFI + +R IIRNVKGPVR+
Sbjct: 1 MDKLT-LARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVRE 48
>U28929-1|AAN63410.1| 418|Caenorhabditis elegans Hypothetical
protein F09C12.2 protein.
Length = 418
Score = 28.7 bits (61), Expect = 1.6
Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
Frame = +2
Query: 125 QVKVEFIGETSRQIIRNVKGP-VRDETSS 208
Q+ +E++G Q+IR +K P +RD SS
Sbjct: 267 QLLIEYLGTPDEQVIRRIKSPSIRDYISS 295
>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
protein K07E12.1b protein.
Length = 12268
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 125 EYTGPENLYGQALSRHEQERWVYP 54
E TGPE+ Q LS++E+ WVYP
Sbjct: 8246 EPTGPED---QKLSKNEKGEWVYP 8266
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 125 EYTGPENLYGQALSRHEQERWVYP 54
E TGPE+ Q LS++E+ WVYP
Sbjct: 9290 EPTGPED---QKLSKNEKGEWVYP 9310
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 125 EYTGPENLYGQALSRHEQERWVYP 54
E TGPE+ Q LS++++ WVYP
Sbjct: 6753 EPTGPED---QKLSKNKKGEWVYP 6773
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 125 EYTGPENLYGQALSRHEQERWVYP 54
E TGPE+ Q LS++++ WVYP
Sbjct: 7472 EPTGPED---QKLSKNKKGEWVYP 7492
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 125 EYTGPENLYGQALSRHEQERWVYP 54
E TGPE+ Q LS++++ WVYP
Sbjct: 10009 EPTGPED---QKLSKNKKGEWVYP 10029
>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
protein K07E12.1a protein.
Length = 13100
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 125 EYTGPENLYGQALSRHEQERWVYP 54
E TGPE+ Q LS++E+ WVYP
Sbjct: 8291 EPTGPED---QKLSKNEKGEWVYP 8311
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 125 EYTGPENLYGQALSRHEQERWVYP 54
E TGPE+ Q LS++E+ WVYP
Sbjct: 9335 EPTGPED---QKLSKNEKGEWVYP 9355
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 125 EYTGPENLYGQALSRHEQERWVYP 54
E TGPE+ Q LS++++ WVYP
Sbjct: 6798 EPTGPED---QKLSKNKKGEWVYP 6818
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 125 EYTGPENLYGQALSRHEQERWVYP 54
E TGPE+ Q LS++++ WVYP
Sbjct: 7517 EPTGPED---QKLSKNKKGEWVYP 7537
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 125 EYTGPENLYGQALSRHEQERWVYP 54
E TGPE+ Q LS++++ WVYP
Sbjct: 10054 EPTGPED---QKLSKNKKGEWVYP 10074
>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
protein.
Length = 13100
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 125 EYTGPENLYGQALSRHEQERWVYP 54
E TGPE+ Q LS++E+ WVYP
Sbjct: 8291 EPTGPED---QKLSKNEKGEWVYP 8311
Score = 27.9 bits (59), Expect = 2.8
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = -2
Query: 125 EYTGPENLYGQALSRHEQERWVYP 54
E TGPE+ Q LS++E+ WVYP
Sbjct: 9335 EPTGPED---QKLSKNEKGEWVYP 9355
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 125 EYTGPENLYGQALSRHEQERWVYP 54
E TGPE+ Q LS++++ WVYP
Sbjct: 6798 EPTGPED---QKLSKNKKGEWVYP 6818
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 125 EYTGPENLYGQALSRHEQERWVYP 54
E TGPE+ Q LS++++ WVYP
Sbjct: 7517 EPTGPED---QKLSKNKKGEWVYP 7537
Score = 26.2 bits (55), Expect = 8.7
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = -2
Query: 125 EYTGPENLYGQALSRHEQERWVYP 54
E TGPE+ Q LS++++ WVYP
Sbjct: 10054 EPTGPED---QKLSKNKKGEWVYP 10074
>Z83129-7|CAB05644.1| 256|Caenorhabditis elegans Hypothetical
protein W06G6.12 protein.
Length = 256
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 7 WCTCAYCIKLDITSQNG*TQRSCSCRESA 93
W CAY + ++SQ T +C+CR A
Sbjct: 120 WECCAYWVSKRMSSQEHHTCPNCNCRVKA 148
>AL021508-1|CAA16431.1| 170|Caenorhabditis elegans Hypothetical
protein Y70C5B.1 protein.
Length = 170
Score = 26.2 bits (55), Expect = 8.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +1
Query: 7 WCTCAYCIKLDITSQNG*TQRSCSCRESA 93
W CAY + ++SQ T +C+CR A
Sbjct: 34 WECCAYWVSKRMSSQEHHTCPNCNCRVKA 62
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,693,580
Number of Sequences: 27780
Number of extensions: 158569
Number of successful extensions: 334
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 333
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 619699724
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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