Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00030
(814 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 130 1e-30
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 128 5e-30
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 128 7e-30
12_01_0060 - 499291-501228 31 0.82
03_02_0593 + 9693125-9693127,9693632-9693733,9694020-9694135,969... 30 2.5
11_01_0558 - 4396750-4396986,4397699-4398050,4398266-4398504,439... 29 4.4
01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115... 29 5.8
06_03_0290 - 19193707-19193752,19193822-19194090 28 7.7
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 130 bits (314), Expect = 1e-30
Identities = 73/156 (46%), Positives = 101/156 (64%), Gaps = 2/156 (1%)
Frame = +3
Query: 234 KVFPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 413
+ + +I+L AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLF 138
Query: 414 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCESLHATSLTLNSGRW*TS*FLTPLPRTSR 593
CIGFT + ++TCYAQ +Q+R IR+KM E + A + + S F+ +
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE-IMANQASSCDLKELVSKFIPEVIGKEI 197
Query: 594 RPAMAS--TLCAMFASER*KC*RGPVFEISKLMELH 695
A +S L +F + K + P F++ KLME+H
Sbjct: 198 EKATSSIFPLQNVFV-RKVKILKAPKFDLGKLMEVH 232
Score = 100 bits (239), Expect = 2e-21
Identities = 47/65 (72%), Positives = 56/65 (86%)
Frame = +1
Query: 55 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 234
VDPF +KDWYD+KAPS+F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 235 RSFRK 249
+++RK
Sbjct: 79 QAYRK 83
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 128 bits (309), Expect = 5e-30
Identities = 66/154 (42%), Positives = 95/154 (61%)
Frame = +3
Query: 234 KVFPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 413
+ + +++L AE VQGRNVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 414 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCESLHATSLTLNSGRW*TS*FLTPLPRTSR 593
CIGFT + ++TCYAQ +Q+R IR+KM E + + T + + + +
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMANQASTCDLKELVSKFIPEVIGKEIE 198
Query: 594 RPAMASTLCAMFASER*KC*RGPVFEISKLMELH 695
+ + + K + P F++ KLME+H
Sbjct: 199 KSTSSIFPLQNVFIRKVKILKAPKFDLGKLMEVH 232
Score = 100 bits (240), Expect = 1e-21
Identities = 47/65 (72%), Positives = 57/65 (87%)
Frame = +1
Query: 55 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 234
VDPF++KDWYD+KAP++FS R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 235 RSFRK 249
+++RK
Sbjct: 79 QAYRK 83
Score = 59.3 bits (137), Expect = 4e-09
Identities = 26/59 (44%), Positives = 43/59 (72%)
Frame = +2
Query: 491 QKENV*IITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRPRF 667
+++ V I+ + +L+E+V+K IP+ I K+IEK+ I+PL++V IRKVK+LK P+F
Sbjct: 165 RRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNVFIRKVKILKAPKF 223
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 128 bits (308), Expect = 7e-30
Identities = 74/158 (46%), Positives = 101/158 (63%), Gaps = 4/158 (2%)
Frame = +3
Query: 234 KVFPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 413
+ + +I+L AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 414 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCESL--HATSLTLNSGRW*TS*FLTPLPRT 587
CIGFT + ++TCYAQ +Q+R IR+KM E + A+S L S F+ +
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVEIMVNQASSCDLKE---LVSKFIPEVIGK 195
Query: 588 SRRPAMAS--TLCAMFASER*KC*RGPVFEISKLMELH 695
A +S L +F + K + P F++ KLME+H
Sbjct: 196 EIEKATSSIFPLQNVFV-RKVKILKAPKFDLGKLMEVH 232
Score = 100 bits (240), Expect = 1e-21
Identities = 48/65 (73%), Positives = 56/65 (86%)
Frame = +1
Query: 55 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 234
VDPF +KDWYD+KAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 235 RSFRK 249
+++RK
Sbjct: 79 QAYRK 83
>12_01_0060 - 499291-501228
Length = 645
Score = 31.5 bits (68), Expect = 0.82
Identities = 32/105 (30%), Positives = 47/105 (44%)
Frame = -1
Query: 616 RVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDSHIFFLIALT*VCWA*HVLRWLKE 437
R+D +A L +L + + +H L R+ + N SH+ F IAL H LR E
Sbjct: 34 RLDLLAALSPLLLRALSSSALH-LHALRLHCLLPNPSHLTFPIALKSASRLPHPLR-AGE 91
Query: 436 SLLVKPMQKTRRTYPSVVFTSMLASMRVCHFLTIHLSLSVVRSMP 302
L + ++ T P V+ TS+L C L H + V MP
Sbjct: 92 QLHARSLKLPSHTNPHVL-TSLLTLYARCGLL--HRAQRVFDEMP 133
>03_02_0593 +
9693125-9693127,9693632-9693733,9694020-9694135,
9694235-9694357,9694448-9694505,9694733-9694771
Length = 146
Score = 29.9 bits (64), Expect = 2.5
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +1
Query: 157 KIASEGLKGRVFEVSLADLQADTDAERSFR--KFS*SPNMCKDVMCSATSTAWTSQPISS 330
K + K R LA AD DA++ R +F S N+ K + A SS
Sbjct: 62 KAEEQKRKSRAERFGLASSSADEDAKKKARLERFGQSTNVDKGEEEKRKARALRFAETSS 121
Query: 331 GGWLKNGRLSSKP 369
G +NG+ SSKP
Sbjct: 122 GPSQENGKDSSKP 134
>11_01_0558 -
4396750-4396986,4397699-4398050,4398266-4398504,
4398608-4398709
Length = 309
Score = 29.1 bits (62), Expect = 4.4
Identities = 11/27 (40%), Positives = 18/27 (66%)
Frame = +2
Query: 545 EVVNKLIPDSIAKDIEKACHGIYPLRD 625
++VN IPD + + ++K C IY LR+
Sbjct: 34 QLVNTGIPDDLLERVKKVCSDIYKLRE 60
>01_06_0872 +
32609792-32610178,32611262-32611387,32611477-32611550,
32611944-32612013,32612088-32612143,32612236-32612307,
32612384-32612478,32612660-32612726,32612809-32612938,
32613135-32613350,32613461-32613591,32614044-32614218,
32614292-32614382,32614653-32614810,32615059-32615247,
32615551-32615564,32616003-32616228
Length = 758
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = +3
Query: 333 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCES 512
W++++W+ + T+G L V G +Q+ ++ + I KK E
Sbjct: 535 WIMEQWENNYYISAIAGATNGSSLVVMSKG----TPYTQQSYKVSESFPFKWINKKWKEG 590
Query: 513 LHATSLTLNSGRW 551
H TS+T RW
Sbjct: 591 FHVTSMTTAGSRW 603
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 7.7
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +1
Query: 289 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 378
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,491,711
Number of Sequences: 37544
Number of extensions: 463093
Number of successful extensions: 1301
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1258
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1296
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2221181676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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