Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00029
(695 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 102 4e-23
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 101 1e-22
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 30 0.36
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 27 3.4
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 3.4
SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein L5|Sch... 26 4.5
SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein L5|Schizo... 26 4.5
SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces pombe... 26 5.9
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe... 25 7.8
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 7.8
SPAC664.08c |||traub transciption factor family protein |Schizos... 25 7.8
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 102 bits (245), Expect = 4e-23
Identities = 45/88 (51%), Positives = 68/88 (77%)
Frame = +2
Query: 239 FPQIQIIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 418
F ++++ E +QG++ L +F+G+ +T+DKLR +V+KWQT IEA+ +KTTDGY+ RVF I
Sbjct: 81 FRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVI 140
Query: 419 GFTNKDSLSQRKTCYAQHTQVRAIRKKM 502
GFT + + +KT YAQ +Q+RAIR+KM
Sbjct: 141 GFTRRRANQVKKTTYAQSSQIRAIRQKM 168
Score = 88.6 bits (210), Expect = 7e-19
Identities = 41/68 (60%), Positives = 51/68 (75%)
Frame = +3
Query: 51 IVDPFTRKDWYDVKAPSMFSKXQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 230
+VDPF+RK+WYD+KAP+ F VG TLVNRT G K A++ LKGR+ EVSLADLQ D
Sbjct: 20 VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77
Query: 231 ERSFRKFR 254
E +FRK +
Sbjct: 78 EHAFRKVK 85
Score = 55.2 bits (127), Expect = 8e-09
Identities = 23/51 (45%), Positives = 37/51 (72%)
Frame = +1
Query: 508 IITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 660
+I ++ +RE+V KLIP+ I ++IE+A I+PL++V +RKVK+LK P
Sbjct: 171 VIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAP 221
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 101 bits (242), Expect = 1e-22
Identities = 44/88 (50%), Positives = 67/88 (76%)
Frame = +2
Query: 239 FPQIQIIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 418
F ++++ E +QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN +KTTDGY+ R+F I
Sbjct: 81 FRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVI 140
Query: 419 GFTNKDSLSQRKTCYAQHTQVRAIRKKM 502
GFT++ +KT YAQ +Q+RAI +KM
Sbjct: 141 GFTSRRVNQVKKTTYAQSSQIRAIHQKM 168
Score = 91.5 bits (217), Expect = 1e-19
Identities = 43/68 (63%), Positives = 51/68 (75%)
Frame = +3
Query: 51 IVDPFTRKDWYDVKAPSMFSKXQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 230
+VDPF+RKDWYD+KAP+ F VG TLVNRT G K A++ LKGR+ EVSLADLQ D
Sbjct: 20 VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77
Query: 231 ERSFRKFR 254
E SFRK +
Sbjct: 78 EHSFRKVK 85
Score = 55.2 bits (127), Expect = 8e-09
Identities = 24/51 (47%), Positives = 35/51 (68%)
Frame = +1
Query: 508 IITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 660
+I ++E+V KLIP+ I + IEKA + IYPL++V +RKVK+LK P
Sbjct: 171 VIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAP 221
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 29.9 bits (64), Expect = 0.36
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
Frame = +1
Query: 412 LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV*IITRDVTNSELREVVNKL 561
LHW+ L+ +Q + P H+GQ S + NV + V E +++ L
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNVEFVNERVPTPEFSSLLSSL 1213
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
Frame = +2
Query: 257 IAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTLIEANIDVKTT 388
+A Q R V C H MDL + LR +V ++ L+E + D++TT
Sbjct: 109 VANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETT 153
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 3.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 352 LPFFNHPPELIGCEVHAVEVAEHITS 275
L H PEL+ C +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206
>SPBC11C11.09c |rpl502|rpl5-2, rpl5b|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 294
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 239 FPQIQIIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKW 349
F QI++ V G VL + H +L ++W + W
Sbjct: 59 FVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANW 95
>SPAC3H5.12c |rpl501|rpl5-1, rpl5|60S ribosomal protein
L5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 294
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/37 (29%), Positives = 18/37 (48%)
Frame = +2
Query: 239 FPQIQIIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKW 349
F QI++ V G VL + H +L ++W + W
Sbjct: 59 FVTCQIVSSRVNGDYVLAHAHSSELPRYGIKWGLANW 95
>SPBC106.14c |sda1||SDA1 family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 719
Score = 25.8 bits (54), Expect = 5.9
Identities = 10/39 (25%), Positives = 21/39 (53%)
Frame = +1
Query: 520 DVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIR 636
D +R++ ++ + +A ++ C GI +R+VC R
Sbjct: 392 DALEPLVRKIADEFVTSGVANEV--VCAGINAIREVCAR 428
>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 882
Score = 25.4 bits (53), Expect = 7.8
Identities = 12/46 (26%), Positives = 21/46 (45%)
Frame = +2
Query: 329 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 466
++ W L+ T GYV+R GFT+ ++ + K +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 25.4 bits (53), Expect = 7.8
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
Frame = -2
Query: 295 VAEHITSL-HIFGDYLNLRKDLSASVSA---CRSARETSKTLPFNPSEAIFVPWVRLTSV 128
+ +H+ S H+ Y L + LS+S CR E S+ + P E IF +L+
Sbjct: 870 IRQHLDSYNHMVELYNTLLQRLSSSDQVDLQCRYLHELSEFIKKIPKEFIFHTICKLSKG 929
Query: 127 VPTCXLLN 104
+ C L+N
Sbjct: 930 LIPCFLMN 937
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.4 bits (53), Expect = 7.8
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +2
Query: 308 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 406
D T D +RWM K Q + N+D K + G +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,884,535
Number of Sequences: 5004
Number of extensions: 60610
Number of successful extensions: 172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -