Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= heS00029
(695 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical pr... 103 9e-23
L25599-3|ABN43087.1| 570|Caenorhabditis elegans Hypothetical pr... 28 5.5
Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 7.3
Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical pr... 28 7.3
AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein. 28 7.3
Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical pr... 27 9.7
AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like prot... 27 9.7
>Z32681-6|CAA83605.1| 257|Caenorhabditis elegans Hypothetical
protein F56F3.5 protein.
Length = 257
Score = 103 bits (248), Expect = 9e-23
Identities = 48/67 (71%), Positives = 57/67 (85%)
Frame = +3
Query: 54 VDPFTRKDWYDVKAPSMFSKXQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 233
VDPF+RK+WYD+KAP+MF+ QVG TL+NRTQGTKIASEGLKGRVFEVSL DL ++E
Sbjct: 20 VDPFSRKEWYDIKAPNMFNTRQVGKTLINRTQGTKIASEGLKGRVFEVSLGDL---NNSE 76
Query: 234 RSFRKFR 254
FRKF+
Sbjct: 77 ADFRKFK 83
Score = 103 bits (248), Expect = 9e-23
Identities = 50/88 (56%), Positives = 62/88 (70%)
Frame = +2
Query: 239 FPQIQIIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 418
F + ++IAE VQG+NVL NFH M +T DKL +VKKW TLIEAN VKTTDGY LRVF I
Sbjct: 79 FRKFKLIAEDVQGKNVLTNFHAMSMTHDKLCSIVKKWHTLIEANTAVKTTDGYTLRVFVI 138
Query: 419 GFTNKDSLSQRKTCYAQHTQVRAIRKKM 502
FT K +KT Y + +++R IR +M
Sbjct: 139 AFTKKSVNQVKKTSYTKTSKIRKIRSEM 166
Score = 74.1 bits (174), Expect = 9e-14
Identities = 33/57 (57%), Positives = 45/57 (78%)
Frame = +1
Query: 490 QKENV*IITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 660
+ E + I ++VT +L+EVV+KLIPDSI KDIEK C +YPL++V IRKVK++KRP
Sbjct: 163 RSEMIGCIEKEVTGCDLKEVVSKLIPDSIGKDIEKTCSKLYPLQEVYIRKVKIIKRP 219
>L25599-3|ABN43087.1| 570|Caenorhabditis elegans Hypothetical
protein F54H12.8 protein.
Length = 570
Score = 28.3 bits (60), Expect = 5.5
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -2
Query: 667 SKRASSTLSPFGCKHRAEGRCHGRPSRCPWQWSQESTCSPPP 542
S ASST S + R +P+ PWQ Q S +PPP
Sbjct: 101 SLTASSTTSDPSIPNPTRKRITRQPNYPPWQPHQPSNPNPPP 142
>Z50006-7|CAA90302.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +2
Query: 416 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCESLHATSLTLNSGRW*T 556
IGF ++ L + C + Q R ++ C S + S+ G W T
Sbjct: 868 IGFQIRERLCDGELCATANKQARTCNQQQCPSAFSLSVWSEWGEWTT 914
>Z50004-4|CAA90293.2| 1461|Caenorhabditis elegans Hypothetical protein
C02B4.1 protein.
Length = 1461
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +2
Query: 416 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCESLHATSLTLNSGRW*T 556
IGF ++ L + C + Q R ++ C S + S+ G W T
Sbjct: 868 IGFQIRERLCDGELCATANKQARTCNQQQCPSAFSLSVWSEWGEWTT 914
>AB066246-1|BAC05514.1| 1461|Caenorhabditis elegans ADT-1 protein.
Length = 1461
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/47 (27%), Positives = 21/47 (44%)
Frame = +2
Query: 416 IGFTNKDSLSQRKTCYAQHTQVRAIRKKMCESLHATSLTLNSGRW*T 556
IGF ++ L + C + Q R ++ C S + S+ G W T
Sbjct: 868 IGFQIRERLCDGELCATANKQARTCNQQQCPSAFSLSVWSEWGEWTT 914
>Z70756-3|CAC42337.1| 2514|Caenorhabditis elegans Hypothetical protein
T06E4.3b protein.
Length = 2514
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 271 HIFGDYLNLRKDLSASVSACRSARETSKTLPFNPSEAI 158
H++G +++R+ SA AR T K PFN +EAI
Sbjct: 1561 HVYGK-ISMREAFGDFNSAACFARMTGKGKPFNSTEAI 1597
>Z70756-2|CAA94790.2| 2531|Caenorhabditis elegans Hypothetical protein
T06E4.3a protein.
Length = 2531
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 271 HIFGDYLNLRKDLSASVSACRSARETSKTLPFNPSEAI 158
H++G +++R+ SA AR T K PFN +EAI
Sbjct: 1561 HVYGK-ISMREAFGDFNSAACFARMTGKGKPFNSTEAI 1597
>AB018598-1|BAA33886.1| 2514|Caenorhabditis elegans ATM-like protein
protein.
Length = 2514
Score = 27.5 bits (58), Expect = 9.7
Identities = 15/38 (39%), Positives = 22/38 (57%)
Frame = -2
Query: 271 HIFGDYLNLRKDLSASVSACRSARETSKTLPFNPSEAI 158
H++G +++R+ SA AR T K PFN +EAI
Sbjct: 1561 HVYGK-ISMREAFGDFNSAACFARMTGKGKPFNSTEAI 1597
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,172,066
Number of Sequences: 27780
Number of extensions: 350488
Number of successful extensions: 970
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 925
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 970
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1602927856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -