Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00029
         (695 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)           125   2e-29
At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) simi...   125   2e-29
At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating]...    30   1.3  
At3g52640.1 68416.m05799 nicastrin-related contains weak similar...    29   2.2  
At4g30240.1 68417.m04300 expressed protein predicted protein, Ar...    29   2.9  
At4g11720.1 68417.m01870 hypothetical protein                          28   6.8  
At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating]...    28   6.8  
At2g17930.1 68415.m02076 FAT domain-containing protein / phospha...    28   6.8  

>At4g34670.1 68417.m04922 40S ribosomal protein S3A (RPS3aB)
          Length = 262

 Score =  125 bits (302), Expect = 2e-29
 Identities = 57/90 (63%), Positives = 72/90 (80%)
 Frame = +2

Query: 239 FPQIQIIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 418
           + +I++ AE VQGRNVL  F GMD TTDKLR +VKKWQTLIEA++DVKTTDGY LR+FCI
Sbjct: 81  YRKIRLRAEDVQGRNVLTQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDGYTLRMFCI 140

Query: 419 GFTNKDSLSQRKTCYAQHTQVRAIRKKMCE 508
            FT + +   ++TCYAQ +Q+R IR+KM E
Sbjct: 141 AFTKRRANQVKRTCYAQSSQIRQIRRKMSE 170



 Score = 99.1 bits (236), Expect = 2e-21
 Identities = 48/67 (71%), Positives = 54/67 (80%)
 Frame = +3

Query: 54  VDPFTRKDWYDVKAPSMFSKXQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 233
           VDPF++KDWYDVKAP  F+   VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D  
Sbjct: 21  VDPFSKKDWYDVKAPGSFTNRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78

Query: 234 RSFRKFR 254
            ++RK R
Sbjct: 79  NAYRKIR 85



 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 26/51 (50%), Positives = 41/51 (80%)
 Frame = +1

Query: 508 IITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 660
           I+ ++ ++ +L+E+V K IP++I ++IEKA  GIYPL++V IRKVK+LK P
Sbjct: 171 IMVKEASSCDLKELVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAP 221


>At3g04840.1 68416.m00525 40S ribosomal protein S3A (RPS3aA) similar
           to 40S ribosomal protein S3A (S phase specific protein
           GBIS289) GB:P49396 [Brassica rapa]
          Length = 262

 Score =  125 bits (302), Expect = 2e-29
 Identities = 56/88 (63%), Positives = 71/88 (80%)
 Frame = +2

Query: 239 FPQIQIIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 418
           + +I++ AE VQGRNVLC F GMD TTDKLR +VKKWQTLIEA++DVKTTD Y LR+FCI
Sbjct: 81  YRKIRLRAEDVQGRNVLCQFWGMDFTTDKLRSLVKKWQTLIEAHVDVKTTDSYTLRLFCI 140

Query: 419 GFTNKDSLSQRKTCYAQHTQVRAIRKKM 502
            FT + +   ++TCYAQ +Q+R IR+KM
Sbjct: 141 AFTKRRANQVKRTCYAQSSQIRQIRRKM 168



 Score =  101 bits (243), Expect = 3e-22
 Identities = 49/67 (73%), Positives = 56/67 (83%)
 Frame = +3

Query: 54  VDPFTRKDWYDVKAPSMFSKXQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 233
           VDPF++KDWYDVKAPS+F+   VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D  
Sbjct: 21  VDPFSKKDWYDVKAPSIFTHRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQGDED-- 78

Query: 234 RSFRKFR 254
            ++RK R
Sbjct: 79  NAYRKIR 85



 Score = 61.7 bits (143), Expect = 5e-10
 Identities = 26/51 (50%), Positives = 41/51 (80%)
 Frame = +1

Query: 508 IITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRKVKVLKRP 660
           I+ R+ ++ +L+++V K IP++I ++IEKA  GIYPL++V IRKVK+LK P
Sbjct: 171 IMVREASSCDLKDLVAKFIPEAIGREIEKATQGIYPLQNVFIRKVKILKAP 221


>At4g33010.1 68417.m04695 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P49361 Glycine dehydrogenase [decarboxylating] A,
           mitochondrial precursor (EC 1.4.4.2) {Flaveria
           pringlei}; contains Pfam profile PF02347: Glycine
           cleavage system P-protein
          Length = 1037

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 627 NIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDSH 502
           +IAQRV  +AG+  +  N +    V  LP F    + C+D+H
Sbjct: 426 SIAQRVHGLAGIFSLGLNKLGVAEVQELPFFDTVKIKCSDAH 467


>At3g52640.1 68416.m05799 nicastrin-related contains weak similarity
           to Nicastrin precursor (Swiss-Prot:Q92542) [Homo
           sapiens]
          Length = 676

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 16/49 (32%), Positives = 30/49 (61%)
 Frame = -2

Query: 496 LSDCSDLSVLGVARLALAQGVLIGETNAEDT*NVSIGCLHINVGFDESL 350
           LS+ +  SV+  A + +A+ + I  ++ +DT N ++G +H+N  F E L
Sbjct: 440 LSNINSSSVVAAASV-VARTLYILASDNKDTSNSALGSIHVNASFVEEL 487


>At4g30240.1 68417.m04300 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 300

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 14/34 (41%), Positives = 17/34 (50%)
 Frame = -2

Query: 685 SINFEISKRASSTLSPFGCKHRAEGRCHGRPSRC 584
           SIN   S  +S   +P G   R EGRC+G    C
Sbjct: 151 SINLRDSSTSSVAENPRGINGRREGRCYGDSPDC 184


>At4g11720.1 68417.m01870 hypothetical protein
          Length = 658

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/56 (28%), Positives = 28/56 (50%)
 Frame = +1

Query: 472 HSGQSNQKENV*IITRDVTNSELREVVNKLIPDSIAKDIEKACHGIYPLRDVCIRK 639
           H GQ +      ++ RD ++S     ++++  DS  K   +A HGI   RDV + +
Sbjct: 594 HHGQDDDVLQKMMLERDHSDSHYYHQLHRVHKDSKQKQRRRAKHGIVLPRDVHVER 649


>At2g26080.1 68415.m03131 glycine dehydrogenase [decarboxylating],
           putative / glycine decarboxylase, putative / glycine
           cleavage system P-protein, putative strong similarity to
           SP|P26969 Glycine dehydrogenase [decarboxylating],
           mitochondrial precursor (EC 1.4.4.2) {Pisum sativum};
           contains Pfam profile PF02347: Glycine cleavage system
           P-protein
          Length = 1044

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -3

Query: 627 NIAQRVDAMAGLLDVLGNGVRNQLVHHLPEFRVSDVACNDSHIFFLIA 484
           +IAQRV  +AG+  +    +    V  LP F    V C+D+   F +A
Sbjct: 432 SIAQRVHGLAGVFALGLKKLGTAQVQDLPFFDTVKVTCSDATAIFDVA 479


>At2g17930.1 68415.m02076 FAT domain-containing protein /
            phosphatidylinositol 3- and 4-kinase family protein
            contains Pfam profiles PF02259 FAT domain, PF00454
            Phosphatidylinositol 3- and 4-kinase, PF02260: FATC
            domain
          Length = 3795

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = -1

Query: 185  SSLQSFRSNFRSLGTVDKRGADLXLAEHRRSLDIVPIFASEWVDNLLLN 39
            S LQS RS F +L  + K  A +   ++ + L++V +  S+W+    LN
Sbjct: 1576 SWLQSNRSVFDTLVLIWKSPARISRLQNEQELNLVQVKESKWLVKCFLN 1624


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,388,625
Number of Sequences: 28952
Number of extensions: 330628
Number of successful extensions: 927
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)