Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00028
         (846 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              28   0.094
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    28   0.094
DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride c...    22   6.2  
DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride c...    22   6.2  
AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl sub...    22   6.2  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    22   8.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    22   8.2  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    22   8.2  
AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.           22   8.2  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 28.3 bits (60), Expect = 0.094
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = +1

Query: 661 CSGDTKTPKCTKKCESGYDVNYKQDKQYGKHVYTCPET 774
           CSGD    KC   C S    +      + K  Y C E+
Sbjct: 60  CSGDISVTKCEGFCNSQVQPSVASTTGFSKECYCCRES 97


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 28.3 bits (60), Expect = 0.094
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = +1

Query: 661 CSGDTKTPKCTKKCESGYDVNYKQDKQYGKHVYTCPET 774
           CSGD    KC   C S    +      + K  Y C E+
Sbjct: 60  CSGDISVTKCEGFCNSQVQPSVASTTGFSKECYCCRES 97


>DQ667182-1|ABG75734.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -3

Query: 811 GPFLNNSARMWSSSPDKYIHVFRIVCLVC 725
           G  +N    M  S  DKY  +   VC VC
Sbjct: 390 GKDINKLYGMTPSDIDKYSRIVFPVCFVC 418


>DQ667181-1|ABG75733.1|  445|Apis mellifera GABA-gated chloride
           channel protein.
          Length = 445

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -3

Query: 811 GPFLNNSARMWSSSPDKYIHVFRIVCLVC 725
           G  +N    M  S  DKY  +   VC VC
Sbjct: 390 GKDINKLYGMTPSDIDKYSRIVFPVCFVC 418


>AF094822-1|AAC63381.1|  365|Apis mellifera GABA receptor Rdl
           subunit protein.
          Length = 365

 Score = 22.2 bits (45), Expect = 6.2
 Identities = 11/29 (37%), Positives = 13/29 (44%)
 Frame = -3

Query: 811 GPFLNNSARMWSSSPDKYIHVFRIVCLVC 725
           G  +N    M  S  DKY  +   VC VC
Sbjct: 328 GKDINKLYGMTPSDIDKYSRIVFPVCFVC 356


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +3

Query: 462 IFIFLPRICLVAALFVTGM 518
           ++I LP   + A +FVTG+
Sbjct: 50  LYIVLPITVIYAVIFVTGL 68


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 587 TIPVKVADLTRSLRVNITYP 646
           T+P++  DLT+S   +ITYP
Sbjct: 95  TLPIE--DLTKSDNEDITYP 112


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 587 TIPVKVADLTRSLRVNITYP 646
           T+P++  DLT+S   +ITYP
Sbjct: 133 TLPIE--DLTKSDNEDITYP 150


>AY545000-1|AAS50159.2|  126|Apis mellifera profilin protein.
          Length = 126

 Score = 21.8 bits (44), Expect = 8.2
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = +3

Query: 756 IYLSGDEDHIRAELFKNG 809
           IYLSG +  IRA+L K G
Sbjct: 69  IYLSGTDRVIRAKLGKVG 86


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,719
Number of Sequences: 438
Number of extensions: 5540
Number of successful extensions: 23
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27188448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)