Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00027
         (706 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    28   1.5  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    27   2.0  
SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    27   3.5  
SPBC23E6.10c |||methylthioribose-1-phosphate isomerase |Schizosa...    26   4.6  
SPAC3A12.04c |||RNase P and RNase MRP subunit p30 |Schizosacchar...    26   6.0  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   6.0  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    25   8.0  

>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +3

Query: 423 APRDHGSRKCFVPIIFPDT-LDLFGGRESVGFNHVVTNAG 539
           A + +G+  CF  I+  +  L L+ G E+  + HVV NAG
Sbjct: 138 ASKYNGTVDCFTKIVKQERILALYNGFEATMWRHVVWNAG 177


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2280

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +1

Query: 292  LGQSQQSIMGYPLLDRSGVDARRVRSRRNFNVGLDDKFGGTAVQHRETMGH 444
            LGQ    I G P++        +V  R  +   L  + GGT V HR  + H
Sbjct: 1783 LGQRAVQIEGQPIILTGAPALNKVLGREVYTSNL--QLGGTQVMHRNGISH 1831


>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1159

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 18/52 (34%), Positives = 29/52 (55%)
 Frame = +1

Query: 379 FNVGLDDKFGGTAVQHRETMGHESALFLSYFQTPLTYLEGGNPSVLTTSSRT 534
           F  GLD+K  GTA + R++    +   L+   TP  YL G +P ++  S+R+
Sbjct: 44  FTSGLDEKASGTASKDRKSGRAGTKSLLTPELTP-HYL-GKSPRIIRVSNRS 93


>SPBC23E6.10c |||methylthioribose-1-phosphate isomerase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 359

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 246 IGKSTKEIHTSFYGRPRTVATIYHGISTTGSVGSRRKTSQEPP 374
           IG     I    +G+P  VA  +  I T+ + GS+    Q PP
Sbjct: 247 IGTYNLAILAKHFGKPFIVAAPFSSIDTSLASGSQITIEQRPP 289


>SPAC3A12.04c |||RNase P and RNase MRP subunit p30
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 235

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
 Frame = -3

Query: 611 SYLRIDLSNADIS--LPFDLEHSFLGSRVRDDV 519
           S L  D+ + D +  LPF L+H+F+G  V  D+
Sbjct: 106 SDLEFDILSIDFTQRLPFYLKHTFMGLAVSRDI 138


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 12/35 (34%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
 Frame = +2

Query: 245  HRKIYKGDSYIIL-RTTSDSRNNLSWDIHYWIGRE 346
            HR ++K     +L R  +   NN SW   +W GR+
Sbjct: 1652 HRLVFKLVVVFLLPREVASGENNYSWWDGHWFGRK 1686


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 25.4 bits (53), Expect = 8.0
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = -2

Query: 264 PL*IFLCPSEQRVLVRSSVFSIFAHRLFCRHWQKPDGL 151
           P  I+L P      +  S  S+ A  L  R W+KP  L
Sbjct: 821 PWGIYLNPMWASAAMMFSSLSVLASSLLLRRWKKPKSL 858


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,052,575
Number of Sequences: 5004
Number of extensions: 68638
Number of successful extensions: 212
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 212
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)