Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= heS00027
         (706 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z70755-3|CAA94782.1|  475|Caenorhabditis elegans Hypothetical pr...    63   2e-10
U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I ho...    40   0.002
L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophi...    40   0.002
U88311-8|AAB42341.2|  918|Caenorhabditis elegans Hypothetical pr...    33   0.26 
AF039718-6|AAB96743.1|  249|Caenorhabditis elegans Hypothetical ...    32   0.46 
Z69635-5|CAA93458.1|  350|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z68014-2|CAA92024.1|  565|Caenorhabditis elegans Hypothetical pr...    31   1.1  
Z82095-7|CAN86628.1|  390|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z82095-6|CAI79281.2|  412|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z82095-5|CAB05026.2|  414|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical pr...    28   5.7  
Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical pr...    28   7.5  
Z49911-2|CAA90130.1|  681|Caenorhabditis elegans Hypothetical pr...    28   7.5  
U10402-9|AAA19065.1|  892|Caenorhabditis elegans Gro-1 operon ge...    28   7.5  
AY052769-1|AAL14108.1|  885|Caenorhabditis elegans GOP-1 protein.      28   7.5  
U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical pr...    27   9.9  

>Z70755-3|CAA94782.1|  475|Caenorhabditis elegans Hypothetical
           protein K06A4.3 protein.
          Length = 475

 Score = 62.9 bits (146), Expect = 2e-10
 Identities = 49/190 (25%), Positives = 89/190 (46%), Gaps = 8/190 (4%)
 Frame = +3

Query: 159 PAFANVGRTAGVQIWRIQNFEPIPVAQKDIGKS-TKEIHTSFYGRPRTVATIYHGI---S 326
           PA A +G+  G+ +WRI  F   PV + D G     + + + Y +      ++  +   +
Sbjct: 8   PALAEIGKKNGLLVWRINKFVLEPVPEVDHGVFYIGDAYIALYQKYDGCWDVHFWLGKNA 67

Query: 327 TTGSVG-SRRKTSQEPPQFQRWPG--RQVRGHSGPAPRDHGSRKCFVPIIFPDTLDLFGG 497
           +T  +G +  KT +        P   R+++ +  P    +          FPD +    G
Sbjct: 68  STDEIGVAAIKTVEIDDSLGGIPTQHREIQNYESPLFLSY----------FPDGIRYVSG 117

Query: 498 RESVGFNHVVTNAGAQK-RMFQVKGKRDVRVRQVDPQIASMNKGDCFVLSLDNDIYVFVG 674
               G+ HV       K  +F  KGKR+VR  +V+ ++ S+N GD F+L L  D+YV++ 
Sbjct: 118 GYESGYRHVDDQFKNWKPHLFHCKGKRNVRCTEVECEVNSLNLGDVFILDLGKDLYVWMP 177

Query: 675 EKAKNVEKLK 704
            ++  +E++K
Sbjct: 178 PESGRLERIK 187



 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 21/42 (50%), Positives = 25/42 (59%)
 Frame = +1

Query: 385 VGLDDKFGGTAVQHRETMGHESALFLSYFQTPLTYLEGGNPS 510
           V +DD  GG   QHRE   +ES LFLSYF   + Y+ GG  S
Sbjct: 80  VEIDDSLGGIPTQHREIQNYESPLFLSYFPDGIRYVSGGYES 121



 Score = 46.4 bits (105), Expect = 2e-05
 Identities = 22/55 (40%), Positives = 30/55 (54%)
 Frame = +2

Query: 245 HRKIYKGDSYIILRTTSDSRNNLSWDIHYWIGRESTQDESGAAAISTLAWTTSSG 409
           H   Y GD+YI L    D      WD+H+W+G+ ++ DE G AAI T+    S G
Sbjct: 37  HGVFYIGDAYIALYQKYDG----CWDVHFWLGKNASTDEIGVAAIKTVEIDDSLG 87


>U01183-1|AAC03567.1| 1257|Caenorhabditis elegans flightless-I
           homolog protein.
          Length = 1257

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +2

Query: 245 HRKIYKGDSYIILRTTSDSRNNLSWDIHYWIGRESTQDESGAAAI 379
           H + Y  D+Y++L+TT ++   L   I YW+G  ++ D+   +A+
Sbjct: 528 HGQFYDADAYLVLKTTREASGQLRHAIFYWLGEHASLDKGMCSAV 572



 Score = 31.5 bits (68), Expect = 0.61
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 385 VGLDDKFGGTAVQHRETMGHESALFLSYFQTPLTYLEGG 501
           VGL +    T    RE M  E+  FL+ F   + Y+EGG
Sbjct: 575 VGLRNHLNATCRTQREEMNDETEEFLTLFGEEIVYIEGG 613


>L07143-3|AAB37088.2| 1257|Caenorhabditis elegans Fli-i (drosophila
           flightless) homologprotein 1 protein.
          Length = 1257

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 14/45 (31%), Positives = 27/45 (60%)
 Frame = +2

Query: 245 HRKIYKGDSYIILRTTSDSRNNLSWDIHYWIGRESTQDESGAAAI 379
           H + Y  D+Y++L+TT ++   L   I YW+G  ++ D+   +A+
Sbjct: 528 HGQFYDADAYLVLKTTREASGQLRHAIFYWLGEHASLDKGMCSAV 572



 Score = 31.5 bits (68), Expect = 0.61
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +1

Query: 385 VGLDDKFGGTAVQHRETMGHESALFLSYFQTPLTYLEGG 501
           VGL +    T    RE M  E+  FL+ F   + Y+EGG
Sbjct: 575 VGLRNHLNATCRTQREEMNDETEEFLTLFGEEIVYIEGG 613


>U88311-8|AAB42341.2|  918|Caenorhabditis elegans Hypothetical
           protein C10H11.1 protein.
          Length = 918

 Score = 32.7 bits (71), Expect = 0.26
 Identities = 16/51 (31%), Positives = 30/51 (58%)
 Frame = +3

Query: 552 MFQVKGKRDVRVRQVDPQIASMNKGDCFVLSLDNDIYVFVGEKAKNVEKLK 704
           + QV+G ++V VR V P ++S+++  CFV+     +  + G  +  +EK K
Sbjct: 221 LIQVRGSKNVDVRLVAPAMSSVHEVACFVVVHQKHLMKYEGLYSNILEKTK 271


>AF039718-6|AAB96743.1|  249|Caenorhabditis elegans Hypothetical
           protein T12F5.1 protein.
          Length = 249

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +3

Query: 78  TATKPQEISGPITSLSDKNARDKAKVHPAFANVGRTAGVQIWRIQNFEPIPVAQKDI--G 251
           T  K QE+ GP+    D+   D AK   ++    R  G      QNF+ I + +K    G
Sbjct: 171 TPEKGQEVEGPVEEFDDETNEDVAKAR-SYNPAARKLGGSSKSDQNFQKINLRKKQFVRG 229

Query: 252 KSTKE 266
           K T E
Sbjct: 230 KVTAE 234


>Z69635-5|CAA93458.1|  350|Caenorhabditis elegans Hypothetical
           protein F19B6.3 protein.
          Length = 350

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/63 (28%), Positives = 31/63 (49%)
 Frame = +1

Query: 205 EYRTSNQYPLLRRT*ENLQRRFIHHFTDDLGQSQQSIMGYPLLDRSGVDARRVRSRRNFN 384
           EYRT+ +Y  + +  E LQR   +H  +   QS + +   P+     +DA+R R+     
Sbjct: 194 EYRTNRRYRTVCKKCEGLQRLKCNHIFELDKQSNKRVASQPM----DIDAKRPRTSHGIT 249

Query: 385 VGL 393
           + L
Sbjct: 250 ISL 252


>Z68014-2|CAA92024.1|  565|Caenorhabditis elegans Hypothetical
           protein W04G3.2 protein.
          Length = 565

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 230 GYWFEVLYSPYLHTG-CSADIGKSRMDFGFVTGVFI 126
           G W++V+YSP + TG CS    K   D G  TG  +
Sbjct: 402 GQWYQVIYSPPVSTGPCSMVSYKKLSDNGEATGSIV 437


>Z82095-7|CAN86628.1|  390|Caenorhabditis elegans Hypothetical
           protein ZK849.2c protein.
          Length = 390

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +1

Query: 424 HRETMGHESALFLSYFQTPLTYLEGGNPSVLTTSSRTREPRNECSRSKGSEMSALDKSI 600
           H +T  HES +     +T LT         L+T       R EC RSK + + AL+  +
Sbjct: 117 HSKTAPHESDMIKKKLETQLTQFRSELTQGLSTVCELEIARKECDRSKRT-IQALETEV 174


>Z82095-6|CAI79281.2|  412|Caenorhabditis elegans Hypothetical
           protein ZK849.2b protein.
          Length = 412

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +1

Query: 424 HRETMGHESALFLSYFQTPLTYLEGGNPSVLTTSSRTREPRNECSRSKGSEMSALDKSI 600
           H +T  HES +     +T LT         L+T       R EC RSK + + AL+  +
Sbjct: 139 HSKTAPHESDMIKKKLETQLTQFRSELTQGLSTVCELEIARKECDRSKRT-IQALETEV 196


>Z82095-5|CAB05026.2|  414|Caenorhabditis elegans Hypothetical
           protein ZK849.2a protein.
          Length = 414

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/59 (30%), Positives = 26/59 (44%)
 Frame = +1

Query: 424 HRETMGHESALFLSYFQTPLTYLEGGNPSVLTTSSRTREPRNECSRSKGSEMSALDKSI 600
           H +T  HES +     +T LT         L+T       R EC RSK + + AL+  +
Sbjct: 141 HSKTAPHESDMIKKKLETQLTQFRSELTQGLSTVCELEIARKECDRSKRT-IQALETEV 198


>U41543-6|AAB37023.1| 2018|Caenorhabditis elegans Hypothetical protein
            F46H5.4 protein.
          Length = 2018

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/48 (33%), Positives = 28/48 (58%), Gaps = 2/48 (4%)
 Frame = +3

Query: 207  IQNFEPIPVAQKDIGKSTKEIHTSF-YGRPRTVATIYHG-ISTTGSVG 344
            +++F PI VA +DI K T+E+  +  +  P+ ++    G I TT + G
Sbjct: 1877 VKDFSPIEVAIEDIEKKTRELSAAAQHKNPKMLSMFIQGSIGTTVNQG 1924


>Z93395-2|CAB07705.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 86  GRRPCPDGSQENKKETRKNDLHP 18
           GRR CPDGS E+K+  +     P
Sbjct: 161 GRRNCPDGSDEHKEHGKCKQHQP 183


>Z83112-5|CAB05541.1|  905|Caenorhabditis elegans Hypothetical
           protein ZC101.1 protein.
          Length = 905

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 86  GRRPCPDGSQENKKETRKNDLHP 18
           GRR CPDGS E+K+  +     P
Sbjct: 161 GRRNCPDGSDEHKEHGKCKQHQP 183


>Z49911-2|CAA90130.1|  681|Caenorhabditis elegans Hypothetical
           protein M28.2 protein.
          Length = 681

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/46 (30%), Positives = 23/46 (50%)
 Frame = +2

Query: 254 IYKGDSYIILRTTSDSRNNLSWDIHYWIGRESTQDESGAAAISTLA 391
           ++  D Y +L   SDS N  S+   +WI ++   D +  A  + LA
Sbjct: 460 VFGDDKYTLLYWNSDSSNWKSFLNQHWIAKKLLNDNAEQAKSANLA 505


>U10402-9|AAA19065.1|  892|Caenorhabditis elegans Gro-1 operon gene
           protein 1 protein.
          Length = 892

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -1

Query: 184 VLPTLAKAGWTLALSRAFLSDSDVIGPLIS*GLVAVRAQTDPRKTKRRH 38
           V P   KAGW +      L D+ + G      ++ V  +  P + K+RH
Sbjct: 726 VEPDSRKAGWAIVRFVGLLQDTTINGDSTDSKVLHVVVEGQPSRIKKRH 774


>AY052769-1|AAL14108.1|  885|Caenorhabditis elegans GOP-1 protein.
          Length = 885

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/49 (28%), Positives = 22/49 (44%)
 Frame = -1

Query: 184 VLPTLAKAGWTLALSRAFLSDSDVIGPLIS*GLVAVRAQTDPRKTKRRH 38
           V P   KAGW +      L D+ + G      ++ V  +  P + K+RH
Sbjct: 719 VEPDSRKAGWAIVRFVGLLQDTTINGDSTDSKVLHVVVEGQPSRIKKRH 767


>U29157-1|AAA68423.4|  675|Caenorhabditis elegans Hypothetical
           protein C34D10.2 protein.
          Length = 675

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 424 HRETMGHESALFLSYFQTPLTYLEGGNPSVLTTSSRTR 537
           H   MGH   L  +     +T ++ GNP++ +TSS  R
Sbjct: 406 HSLNMGHLDMLKRNMIINGMTSIDSGNPALTSTSSLCR 443


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,218,606
Number of Sequences: 27780
Number of extensions: 403831
Number of successful extensions: 1340
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1340
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)